1 Response_reg#1
3-113 aa · 111 aa · 46.6% of protein
Raw token
Response_reg:3:3.03e-26:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFPG_RS03410
Response regulator OmpR family
Enterococcus faecium 1,230,933 · GCF_000157435
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157435#EFPG_RS03410Stable P2CS identifier used across views.
GenomeGCF_000157435Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 31.9% of protein
Raw token
Trans_reg_C:157:3.42e-36:232:78:77- Raw architecture: Response_reg:3:3.03e-26:113:111:111#Trans_reg_C:157:3.42e-36:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157435::NZ_GG692537.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span730429-732611Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFPG_00676RefSeq proteinWP_002288590.1
Context group ID
GCF_000157435::NZ_GG692537.1::G00019Context members
EFPG_RS03405EFPG_RS03410
Partner locus tags
EFPG_RS03405EFPG_RS03410
Partner old locus tags
EFPG_00675EFPG_00676
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288590.1Primary protein accession used for annex mappings.
UniProt accessionQ3XZ22Primary UniProt accession resolved in the annex database.
UniProt IDQ3XZ22_ENTFDDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFPG_RS03410Primary locus identifier stored in the genes table.
Old locus tagEFPG_00676Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692537.1Sequence record reported by the local genomic context database.
Genomic interval731 895-732 611 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span730 429-732 611 ntGCF_000157435::NZ_GG692537.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157435::NZ_GG692537.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692537.1All displayed genes belong to this local TCS context.
Neighborhood span730 429-732 611 nt2 183 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
730 429 nt732 611 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFPG_RS03405GCF_000157435#EFPG_RS03405
HKClassic
730 429-731 895 nt · Reverse (-)
EFPG_RS03410GCF_000157435#EFPG_RS03410
RROmpRCurrent focus
731 895-732 611 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS08710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932482
Simplified PFAM architecture for RROC_0932482
PFAM domain coverage: 182 / 238 aa (76.5%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[163-232]
- Domain count: 2
- Matched identifier: RROC_0932482
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 163-232 ; Trans_reg_C 163-232
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS08710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 656 · GCF_000157435
AssemblyASM15743v1 · Scaffoldhaploid
Genome composition3 140 782 bp · 38,0% GCEnterococcus faecium 1,230,933
Signal transduction countsGenes 36 · HK 18 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key