1 HisKA#1
220-286 aa · 67 aa · 15.0% of protein
Raw token
HisKA:220:0.0000000000262:286:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFPG_RS01825
Histidine kinase, Classic
Enterococcus faecium 1,230,933 · GCF_000157435
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157435#EFPG_RS01825Stable P2CS identifier used across views.
GenomeGCF_000157435Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 446 aa (40.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
333-444 aa · 112 aa · 25.1% of protein
Raw token
HATPase_c:333:7.34e-27:444:113:109- Raw architecture: HisKA:220:0.0000000000262:286:67:64#HATPase_c:333:7.34e-27:444:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157435::NZ_GG692537.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span382486-383826Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFPG_00357RefSeq proteinWP_002297809.1
Context group ID
GCF_000157435::NZ_GG692537.1::G00017Context members
EFPG_RS01825
Partner locus tags
EFPG_RS01825
Partner old locus tags
EFPG_00357
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002297809.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3L2I4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3L2I4_ENTFCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFPG_RS01825Primary locus identifier stored in the genes table.
Old locus tagEFPG_00357Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692537.1Sequence record reported by the local genomic context database.
Genomic interval382 486-383 826 nt1 341 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span382 486-383 826 ntGCF_000157435::NZ_GG692537.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157435::NZ_GG692537.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692537.1All displayed genes belong to this local TCS context.
Neighborhood span382 486-383 826 nt1 341 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
382 486 nt383 826 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFPG_RS01825GCF_000157435#EFPG_RS01825
HKClassicCurrent focus
382 486-383 826 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157435#EFPG_RS01825The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2010512
Simplified PFAM architecture for HKOC_2010512
PFAM domain coverage: 177 / 446 aa (39.7%)
1 aa446 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[221-286] | HATPase_c[333-443]
- Domain count: 2
- Matched identifier: HKOC_2010512
- Positioned domains: HisKA 221-286 ; HATPase_c 333-443
Cluster members and taxonomy
Representative gene: GCF_000157435#EFPG_RS01825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 656 · GCF_000157435
AssemblyASM15743v1 · Scaffoldhaploid
Genome composition3 140 782 bp · 38,0% GCEnterococcus faecium 1,230,933
Signal transduction countsGenes 36 · HK 18 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key