1 HAMP#1
68-135 aa · 68 aa · 18.7% of protein
Raw token
HAMP:68:0.00000174:135:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFGG_RS16970
Histidine kinase, Classic
Enterococcus faecalis Merz96 · GCF_000157315
ClassHKTypeClassicLength363 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157315#EFGG_RS16970Stable P2CS identifier used across views.
GenomeGCF_000157315Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length363 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 363 aa (58.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa363 aa
Domain-by-domain annotation3 items
2 HisKA#2
156-220 aa · 65 aa · 17.9% of protein
Raw token
HisKA:156:0.00000362:220:65:643 HATPase_c#3
266-343 aa · 78 aa · 21.5% of protein
Raw token
HATPase_c:266:0.0000045:343:90:109- Raw architecture: HAMP:68:0.00000174:135:70:69#HisKA:156:0.00000362:220:65:64#HATPase_c:266:0.0000045:343:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157315::NZ_GG692929.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span742770-743863Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFGG_00719RefSeq proteinWP_080001725.1
Context group ID
GCF_000157315::NZ_GG692929.1::G00003Context members
EFGG_RS16970
Partner locus tags
EFGG_RS16970
Partner old locus tags
EFGG_00719
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080001725.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFGG_RS16970Primary locus identifier stored in the genes table.
Old locus tagEFGG_00719Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692929.1Sequence record reported by the local genomic context database.
Genomic interval742 770-743 863 nt1 094 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span742 770-743 863 ntGCF_000157315::NZ_GG692929.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157315::NZ_GG692929.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692929.1All displayed genes belong to this local TCS context.
Neighborhood span742 770-743 863 nt1 094 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
742 770 nt743 863 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFGG_RS16970GCF_000157315#EFGG_RS16970
HKClassicCurrent focus
742 770-743 863 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS08940Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2082206
Simplified PFAM architecture for HKOC_2082206
PFAM domain coverage: 147 / 439 aa (33.5%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-424]
- Domain count: 2
- Matched identifier: HKOC_2082206
- Positioned domains: HisKA 233-296 ; HATPase_c 342-424
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS08940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 645 · GCF_000157315
AssemblyASM15731v1 · Scaffoldhaploid
Genome composition3 085 251 bp · 37,5% GCEnterococcus faecalis Merz96
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key