1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:9.43e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFCG_RS07235
Response regulator NarL family
Enterococcus faecalis T3 · GCF_000157175
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157175#EFCG_RS07235Stable P2CS identifier used across views.
GenomeGCF_000157175Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:2.18e-25:203:58:58- Raw architecture: Response_reg:4:9.43e-26:116:113:111#HTH_LUXR:146:2.18e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157175::NZ_GG670361.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span370664-372374Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFCG_02276RefSeq proteinWP_002355137.1
Context group ID
GCF_000157175::NZ_GG670361.1::G00016Context members
EFCG_RS07230EFCG_RS07235
Partner locus tags
EFCG_RS07230EFCG_RS07235
Partner old locus tags
EFCG_02275EFCG_02276
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355137.1Primary protein accession used for annex mappings.
UniProt accessionQ82ZY6Primary UniProt accession resolved in the annex database.
UniProt IDQ82ZY6_ENTFADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFCG_RS07235Primary locus identifier stored in the genes table.
Old locus tagEFCG_02276Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG670361.1Sequence record reported by the local genomic context database.
Genomic interval371 742-372 374 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span370 664-372 374 ntGCF_000157175::NZ_GG670361.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157175::NZ_GG670361.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG670361.1All displayed genes belong to this local TCS context.
Neighborhood span370 664-372 374 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
370 664 nt372 374 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFCG_RS07230GCF_000157175#EFCG_RS07230
HKClassic
370 664-371 767 nt · Forward (+)
EFCG_RS07235GCF_000157175#EFCG_RS07235
RRNarLCurrent focus
371 742-372 374 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS13800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2018840
Simplified PFAM architecture for RROC_2018840
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-203]
- Domain count: 2
- Matched identifier: RROC_2018840
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-203 ; GerE 149-203
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS13800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 638 · GCF_000157175
AssemblyASM15717v1 · Scaffoldhaploid
Genome composition2 791 208 bp · 37,5% GCEnterococcus faecalis T3
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key