1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000254:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFBG_RS19320
Histidine kinase, Classic
Enterococcus faecalis T2 · GCF_000157155
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157155#EFBG_RS19320Stable P2CS identifier used across views.
GenomeGCF_000157155Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 439 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000409:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.0000057:419:90:109- Raw architecture: HAMP:144:0.00000254:211:70:69#HisKA:232:0.00000409:296:65:64#HATPase_c:342:0.0000057:419:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157155::NZ_GG692851.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span834669-836638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFBG_00819RefSeq proteinWP_002297866.1
Context group ID
GCF_000157155::NZ_GG692851.1::G00002Context members
EFBG_RS19315EFBG_RS19320
Partner locus tags
EFBG_RS19315EFBG_RS19320
Partner old locus tags
EFBG_00818EFBG_00819
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002297866.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9P5G3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9P5G3_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFBG_RS19320Primary locus identifier stored in the genes table.
Old locus tagEFBG_00819Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692851.1Sequence record reported by the local genomic context database.
Genomic interval835 319-836 638 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span834 669-836 638 ntGCF_000157155::NZ_GG692851.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157155::NZ_GG692851.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692851.1All displayed genes belong to this local TCS context.
Neighborhood span834 669-836 638 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
834 669 nt836 638 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFBG_RS19315GCF_000157155#EFBG_RS19315
RROmpR
834 669-835 322 nt · Forward (+)
EFBG_RS19320GCF_000157155#EFBG_RS19320
HKClassicCurrent focus
835 319-836 638 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS13205Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2082275
Simplified PFAM architecture for HKOC_2082275
PFAM domain coverage: 147 / 439 aa (33.5%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-424]
- Domain count: 2
- Matched identifier: HKOC_2082275
- Positioned domains: HisKA 233-296 ; HATPase_c 342-424
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS13205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 637 · GCF_000157155
AssemblyASM15715v1 · Scaffoldhaploid
Genome composition3 263 835 bp · 37,0% GCEnterococcus faecalis T2
Signal transduction countsGenes 28 · HK 13 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key