1 Response_reg#1
4-122 aa · 119 aa · 49.8% of protein
Raw token
Response_reg:4:5.27e-16:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFAG_RS06425
Response regulator LytTR family
Enterococcus faecalis T1 · GCF_000157135
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157135#EFAG_RS06425Stable P2CS identifier used across views.
GenomeGCF_000157135Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 239 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
150-239 aa · 90 aa · 37.7% of protein
Raw token
LytTR:150:7.94e-21:239:95:98- Raw architecture: Response_reg:4:5.27e-16:122:120:111#LytTR:150:7.94e-21:239:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157135::NZ_GG670346.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span174228-174947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFAG_02279RefSeq proteinWP_002413786.1
Context group ID
GCF_000157135::NZ_GG670346.1::G00016Context members
EFAG_RS06425
Partner locus tags
EFAG_RS06425
Partner old locus tags
EFAG_02279
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002413786.1Primary protein accession used for annex mappings.
UniProt accessionR3HVN6Primary UniProt accession resolved in the annex database.
UniProt IDR3HVN6_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFAG_RS06425Primary locus identifier stored in the genes table.
Old locus tagEFAG_02279Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG670346.1Sequence record reported by the local genomic context database.
Genomic interval174 228-174 947 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span174 228-174 947 ntGCF_000157135::NZ_GG670346.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157135::NZ_GG670346.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG670346.1All displayed genes belong to this local TCS context.
Neighborhood span174 228-174 947 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 228 nt174 947 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFAG_RS06425GCF_000157135#EFAG_RS06425
RRLytTRCurrent focus
174 228-174 947 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030237805#QRO86_RS04490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0670582
Simplified PFAM architecture for RROC_0670582
PFAM domain coverage: 209 / 257 aa (81.3%)
1 aa257 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0670582
- Positioned domains: Response_reg 4-122 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_030237805#QRO86_RS04490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 636 · GCF_000157135
AssemblyASM15713v1 · Scaffoldhaploid
Genome composition2 950 691 bp · 37,5% GCEnterococcus faecalis T1
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key