1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:2.12e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FTE_RS01490
Response regulator OmpR family
Francisella tularensis subsp. novicida FTE · GCF_000155755
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155755#FTE_RS01490Stable P2CS identifier used across views.
GenomeGCF_000155755Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:1.75e-21:224:77:77- Raw architecture: Response_reg:5:2.12e-29:114:111:111#Trans_reg_C:149:1.75e-21:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155755::NZ_DS989820.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163032-166441Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFTE_0226RefSeq proteinWP_003041395.1
Context group ID
GCF_000155755::NZ_DS989820.1::G00002Context members
FTE_RS01490FTE_RS01485
Partner locus tags
FTE_RS01490FTE_RS01485
Partner old locus tags
FTE_0226FTE_0227
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003041395.1Primary protein accession used for annex mappings.
UniProt accessionA0Q8K6Primary UniProt accession resolved in the annex database.
UniProt IDA0Q8K6_FRATNDisplay identifier provided by UniProt.
GO / PubMed6 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFTE_RS01490Primary locus identifier stored in the genes table.
Old locus tagFTE_0226Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS989820.1Sequence record reported by the local genomic context database.
Genomic interval163 032-163 718 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 032-166 441 ntGCF_000155755::NZ_DS989820.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155755::NZ_DS989820.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS989820.1All displayed genes belong to this local TCS context.
Neighborhood span163 032-166 441 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 032 nt166 441 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FTE_RS01490GCF_000155755#FTE_RS01490
RROmpRCurrent focus
163 032-163 718 nt · Reverse (-)
FTE_RS01485GCF_000155755#FTE_RS01485
HKClassic
163 760-166 441 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000014645#FTN_RS08800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301666
Simplified PFAM architecture for RROC_1301666
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1301666
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-224 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_000014645#FTN_RS08800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 545 422 · GCF_000155755
AssemblyFTE_ASSEMBLY · Scaffoldhaploid
Genome composition1 888 872 bp · 32,5% GCFrancisella tularensis subsp. novicida FTE
Signal transduction countsGenes 6 · HK 3 · RR 3CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key