1 Response_reg#1
11-124 aa · 114 aa · 49.4% of protein
Raw token
Response_reg:11:0.0000000000000322:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLIG_RS04365
Response regulator NarL family
Bifidobacterium longum subsp. infantis CCUG 52486 · GCF_000155415
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155415#BLIG_RS04365Stable P2CS identifier used across views.
GenomeGCF_000155415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 231 aa (74.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-225 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:168:3.95e-26:225:58:58- Raw architecture: Response_reg:11:0.0000000000000322:124:114:111#HTH_LUXR:168:3.95e-26:225:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155415::NZ_DS990240.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38526-39221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLIG_01604RefSeq proteinWP_007052337.1
Context group ID
GCF_000155415::NZ_DS990240.1::G00004Context members
BLIG_RS04365
Partner locus tags
BLIG_RS04365
Partner old locus tags
BLIG_01604
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007052337.1Primary protein accession used for annex mappings.
UniProt accessionC5EB86Primary UniProt accession resolved in the annex database.
UniProt IDC5EB86_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLIG_RS04365Primary locus identifier stored in the genes table.
Old locus tagBLIG_01604Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990240.1Sequence record reported by the local genomic context database.
Genomic interval38 526-39 221 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 526-39 221 ntGCF_000155415::NZ_DS990240.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155415::NZ_DS990240.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990240.1All displayed genes belong to this local TCS context.
Neighborhood span38 526-39 221 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 526 nt39 221 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLIG_RS04365GCF_000155415#BLIG_RS04365
RRNarLCurrent focus
38 526-39 221 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155415#BLIG_RS04365The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158118
Simplified PFAM architecture for RROC_1158118
PFAM domain coverage: 169 / 231 aa (73.2%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[170-225]
- Domain count: 2
- Matched identifier: RROC_1158118
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 170-225 ; GerE 170-225
Cluster members and taxonomy
Representative gene: GCF_000155415#BLIG_RS04365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 537 937 · GCF_000155415
AssemblyASM15541v1 · Scaffoldhaploid
Genome composition2 480 850 bp · 60,0% GCBifidobacterium longum subsp. infantis CCUG 52486
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key