1 Response_reg#1
6-76 aa · 71 aa · 37.8% of protein
Raw token
Response_reg:6:0.00000000000000472:76:73:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBNG_RS09045
Response regulator LytTR family
Bifidobacterium bifidum NCIMB 41171 · GCF_000155395
ClassRRTypeLytTRLength188 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155395#BBNG_RS09045Stable P2CS identifier used across views.
GenomeGCF_000155395Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length188 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 188 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa188 aa
Domain-by-domain annotation2 items
2 LytTR#2
95-181 aa · 87 aa · 46.3% of protein
Raw token
LytTR:95:0.0000000000000376:181:94:98- Raw architecture: Response_reg:6:0.00000000000000472:76:73:111#LytTR:95:0.0000000000000376:181:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155395::NZ_DS990231.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span112123-112689Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBNG_01818RefSeq proteinWP_080545239.1
Context group ID
GCF_000155395::NZ_DS990231.1::G00001Context members
BBNG_RS09045
Partner locus tags
BBNG_RS09045
Partner old locus tags
BBNG_01818
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080545239.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBNG_RS09045Primary locus identifier stored in the genes table.
Old locus tagBBNG_01818Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990231.1Sequence record reported by the local genomic context database.
Genomic interval112 123-112 689 nt567 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span112 123-112 689 ntGCF_000155395::NZ_DS990231.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155395::NZ_DS990231.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990231.1All displayed genes belong to this local TCS context.
Neighborhood span112 123-112 689 nt567 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 123 nt112 689 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBNG_RS09045GCF_000155395#BBNG_RS09045
RRLytTRCurrent focus
112 123-112 689 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS09045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2173398
Simplified PFAM architecture for RROC_2173398
PFAM domain coverage: 155 / 188 aa (82.4%)
1 aa188 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-75] | LytTR[97-181]
- Domain count: 2
- Matched identifier: RROC_2173398
- Positioned domains: Response_reg 6-75 ; Response_reg 6-75 ; LytTR 97-181 ; LytTR 97-181
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS09045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 513 · GCF_000155395
AssemblyASM15539v1 · Scaffoldhaploid
Genome composition2 202 695 bp · 63,0% GCBifidobacterium bifidum NCIMB 41171
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key