1 Response_reg#1
62-175 aa · 114 aa · 41.2% of protein
Raw token
Response_reg:62:8.12e-16:175:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBNG_RS07945
Response regulator NarL family
Bifidobacterium bifidum NCIMB 41171 · GCF_000155395
ClassRRTypeNarLLength277 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155395#BBNG_RS07945Stable P2CS identifier used across views.
GenomeGCF_000155395Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length277 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 277 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa277 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
214-271 aa · 58 aa · 20.9% of protein
Raw token
HTH_LUXR:214:2.71e-26:271:58:58- Raw architecture: Response_reg:62:8.12e-16:175:114:111#HTH_LUXR:214:2.71e-26:271:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155395::NZ_DS990230.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span383901-384734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBNG_01600RefSeq proteinWP_003817677.1
Context group ID
GCF_000155395::NZ_DS990230.1::G00003Context members
BBNG_RS07945
Partner locus tags
BBNG_RS07945
Partner old locus tags
BBNG_01600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003817677.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBNG_RS07945Primary locus identifier stored in the genes table.
Old locus tagBBNG_01600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990230.1Sequence record reported by the local genomic context database.
Genomic interval383 901-384 734 nt834 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span383 901-384 734 ntGCF_000155395::NZ_DS990230.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155395::NZ_DS990230.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990230.1All displayed genes belong to this local TCS context.
Neighborhood span383 901-384 734 nt834 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 901 nt384 734 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBNG_RS07945GCF_000155395#BBNG_RS07945
RRNarLCurrent focus
383 901-384 734 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS07945The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0601026
Simplified PFAM architecture for RROC_0601026
PFAM domain coverage: 169 / 277 aa (61.0%)
1 aa277 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[62-174] | GerE[216-271]
- Domain count: 2
- Matched identifier: RROC_0601026
- Positioned domains: Response_reg 62-174 ; Response_reg 62-174 ; GerE 216-271 ; GerE 216-271
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS07945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 513 · GCF_000155395
AssemblyASM15539v1 · Scaffoldhaploid
Genome composition2 202 695 bp · 63,0% GCBifidobacterium bifidum NCIMB 41171
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key