1 HisKA_3#1
227-289 aa · 63 aa · 7.1% of protein
Raw token
HisKA_3:227:4.5e-18:289:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBNG_RS05600
Histidine kinase, Classic
Bifidobacterium bifidum NCIMB 41171 · GCF_000155395
ClassHKTypeClassicLength882 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155395#BBNG_RS05600Stable P2CS identifier used across views.
GenomeGCF_000155395Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length882 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 882 aa (26.0%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa882 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
335-425 aa · 91 aa · 10.3% of protein
Raw token
HATPase_c:335:0.000000000109:425:108:1093 HisKA_3#3
773-847 aa · 75 aa · 8.5% of protein
Raw token
HisKA_3:773:0.0000144:847:75:68- Raw architecture: HisKA_3:227:4.5e-18:289:63:68#HATPase_c:335:0.000000000109:425:108:109#HisKA_3:773:0.0000144:847:75:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155395::NZ_DS990229.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1293790-1297292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBNG_01135RefSeq proteinWP_230454011.1
Context group ID
GCF_000155395::NZ_DS990229.1::G00013Context members
BBNG_RS05600BBNG_RS05605
Partner locus tags
BBNG_RS05600BBNG_RS05605
Partner old locus tags
BBNG_01135BBNG_01136
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_230454011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBNG_RS05600Primary locus identifier stored in the genes table.
Old locus tagBBNG_01135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990229.1Sequence record reported by the local genomic context database.
Genomic interval1 293 790-1 296 438 nt2 649 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 293 790-1 297 292 ntGCF_000155395::NZ_DS990229.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155395::NZ_DS990229.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990229.1All displayed genes belong to this local TCS context.
Neighborhood span1 293 790-1 297 292 nt3 503 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 293 790 nt1 297 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBNG_RS05600GCF_000155395#BBNG_RS05600
HKClassicCurrent focus
1 293 790-1 296 438 nt · Forward (+)
BBNG_RS05605GCF_000155395#BBNG_RS05605
RRNarL
1 296 546-1 297 292 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS05600The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0443298
Simplified PFAM architecture for HKOC_0443298
PFAM domain coverage: 406 / 882 aa (46.0%)
1 aa882 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[5-126] | HisKA_3[227-289] | HATPase_c[336-425] | DUF7134[564-694]
- Domain count: 4
- Matched identifier: HKOC_0443298
- Positioned domains: DUF7134 5-126 ; HisKA_3 227-289 ; HATPase_c 336-425 ; DUF7134 564-694
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS05600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 513 · GCF_000155395
AssemblyASM15539v1 · Scaffoldhaploid
Genome composition2 202 695 bp · 63,0% GCBifidobacterium bifidum NCIMB 41171
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key