1 HisKA#1
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000505:726:72:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAE_RS0207345
Histidine kinase, Classic
Clostridioides difficile QCD-23m63 · GCF_000155065
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155065#QAE_RS0207345Stable P2CS identifier used across views.
GenomeGCF_000155065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 912 aa (20.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa912 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
774-885 aa · 112 aa · 12.3% of protein
Raw token
HATPase_c:774:1.95e-24:885:112:109- Raw architecture: HisKA:655:0.00000000505:726:72:64#HATPase_c:774:1.95e-24:885:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155065::NZ_CM000660.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1517738-1520476Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000155065::NZ_CM000660.1::G00019Context members
QAE_RS0207345
Partner locus tags
QAE_RS0207345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009905461.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAE_RS0207345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CM000660.1Sequence record reported by the local genomic context database.
Genomic interval1 517 738-1 520 476 nt2 739 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 517 738-1 520 476 ntGCF_000155065::NZ_CM000660.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155065::NZ_CM000660.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000660.1All displayed genes belong to this local TCS context.
Neighborhood span1 517 738-1 520 476 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 517 738 nt1 520 476 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QAE_RS0207345GCF_000155065#QAE_RS0207345
HKClassicCurrent focus
1 517 738-1 520 476 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0207345The current gene is the representative for this cluster.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387823
Simplified PFAM architecture for HKOC_0387823
PFAM domain coverage: 219 / 912 aa (24.0%)
1 aa912 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[534-572] | HisKA[656-724] | HATPase_c[774-884]
- Domain count: 3
- Matched identifier: HKOC_0387823
- Positioned domains: PAS_8 534-572 ; HisKA 656-724 ; HATPase_c 774-884
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0207345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 499 174 · GCF_000155065
AssemblyASM15506v1 · Chromosomehaploid
Genome composition3 940 285 bp · 28,5% GCClostridioides difficile QCD-23m63
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key