1 HisKA#1
166-226 aa · 61 aa · 15.9% of protein
Raw token
HisKA:166:0.000000000000517:226:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAE_RS02000000218615
Histidine kinase, Classic
Clostridioides difficile QCD-23m63 · GCF_000155065
ClassHKTypeClassicLength384 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155065#QAE_RS02000000218615Stable P2CS identifier used across views.
GenomeGCF_000155065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length384 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 384 aa (43.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
273-378 aa · 106 aa · 27.6% of protein
Raw token
HATPase_c:273:4.23e-27:378:107:109- Raw architecture: HisKA:166:0.000000000000517:226:61:64#HATPase_c:273:4.23e-27:378:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155065::NZ_CM000660.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span969127-971061Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000155065::NZ_CM000660.1::G00012Context members
QAE_RS0204710QAE_RS02000000218615
Partner locus tags
QAE_RS0204710QAE_RS02000000218615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009905210.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAE_RS02000000218615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CM000660.1Sequence record reported by the local genomic context database.
Genomic interval969 907-971 061 nt1 155 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span969 127-971 061 ntGCF_000155065::NZ_CM000660.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155065::NZ_CM000660.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000660.1All displayed genes belong to this local TCS context.
Neighborhood span969 127-971 061 nt1 935 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
969 127 nt971 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAE_RS0204710GCF_000155065#QAE_RS0204710
RROmpR
969 127-969 810 nt · Forward (+)
QAE_RS02000000218615GCF_000155065#QAE_RS02000000218615
HKClassicCurrent focus
969 907-971 061 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS02000000218615The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2572894
Simplified PFAM architecture for HKOC_2572894
PFAM domain coverage: 172 / 384 aa (44.8%)
1 aa384 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-226] | HATPase_c[273-381]
- Domain count: 2
- Matched identifier: HKOC_2572894
- Positioned domains: HisKA 164-226 ; HATPase_c 273-381
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS02000000218615
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000155065#QAE_RS02000000218615 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 499 174 · GCF_000155065
AssemblyASM15506v1 · Chromosomehaploid
Genome composition3 940 285 bp · 28,5% GCClostridioides difficile QCD-23m63
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key