1 HisKA#1
73-136 aa · 64 aa · 21.6% of protein
Raw token
HisKA:73:0.000000000000105:136:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAA_RS02000000219680
Histidine kinase, Classic
Clostridioides difficile CIP 107932 · GCF_000155045
ClassHKTypeClassicLength296 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_000155045#EAA_RS02000000219680Stable P2CS identifier used across views.
GenomeGCF_000155045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 296 aa (58.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
185-293 aa · 109 aa · 36.8% of protein
Raw token
HATPase_c:185:3.62e-25:293:110:109- Raw architecture: HisKA:73:0.000000000000105:136:64:64#HATPase_c:185:3.62e-25:293:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_000155045::NZ_CM000659.1::G00052
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3573021-3578745Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000155045::NZ_CM000659.1::G00052Context members
EAA_RS02000000219680EAA_RS0216415EAA_RS0216420EAA_RS0216425EAA_RS0216430
Partner locus tags
EAA_RS02000000219680EAA_RS0216415EAA_RS0216420EAA_RS0216425EAA_RS0216430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009904571.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAA_RS02000000219680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CM000659.1Sequence record reported by the local genomic context database.
Genomic interval3 573 021-3 573 911 nt891 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 573 021-3 578 745 ntGCF_000155045::NZ_CM000659.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155045::NZ_CM000659.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000659.1All displayed genes belong to this local TCS context.
Neighborhood span3 573 021-3 578 745 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 573 021 nt3 578 745 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
EAA_RS02000000219680GCF_000155045#EAA_RS02000000219680
HKClassicCurrent focus
3 573 021-3 573 911 nt · Reverse (-)
EAA_RS0216415GCF_000155045#EAA_RS0216415
RROmpR
3 574 171-3 574 869 nt · Reverse (-)
EAA_RS0216420GCF_000155045#EAA_RS0216420
RROmpR
3 575 251-3 575 931 nt · Reverse (-)
EAA_RS0216425GCF_000155045#EAA_RS0216425
HKClassic
3 575 981-3 577 996 nt · Reverse (-)
EAA_RS0216430GCF_000155045#EAA_RS0216430
RROmpR
3 578 068-3 578 745 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155045#EAA_RS02000000219680The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2891279
Simplified PFAM architecture for HKOC_2891279
PFAM domain coverage: 174 / 296 aa (58.8%)
1 aa296 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-138] | HATPase_c[186-294]
- Domain count: 2
- Matched identifier: HKOC_2891279
- Positioned domains: HisKA 74-138 ; HATPase_c 186-294
Cluster members and taxonomy
Representative gene: GCF_000155045#EAA_RS02000000219680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 499 176 · GCF_000155045
Assemblycdeaa · Chromosomehaploid
Genome composition4 036 680 bp · 28,5% GCClostridioides difficile CIP 107932
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key