1 Hpt#1
10-113 aa · 104 aa · 15.9% of protein
Raw token
Hpt:10:0.0000000000000209:113:104:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAA_RS02000000218785
Histidine kinase, CheA
Clostridioides difficile CIP 107932 · GCF_000155045
ClassHKTypeCheALength655 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155045#EAA_RS02000000218785Stable P2CS identifier used across views.
GenomeGCF_000155045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length655 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage389 / 655 aa (59.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa655 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
319-380 aa · 62 aa · 9.5% of protein
Raw token
H-kinase_dim:319:0.00000000000000492:380:67:673 HATPase_c#3
427-566 aa · 140 aa · 21.4% of protein
Raw token
HATPase_c:427:8.34e-18:566:140:1094 CheW#4
571-653 aa · 83 aa · 12.7% of protein
Raw token
CheW:571:0.0000000322:653:84:138- Raw architecture: Hpt:10:0.0000000000000209:113:104:84#H-kinase_dim:319:0.00000000000000492:380:67:67#HATPase_c:427:8.34e-18:566:140:109#CheW:571:0.0000000322:653:84:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155045::NZ_CM000659.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span518935-520902Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000155045::NZ_CM000659.1::G00011Context members
EAA_RS02000000218785
Partner locus tags
EAA_RS02000000218785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009904021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAA_RS02000000218785Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CM000659.1Sequence record reported by the local genomic context database.
Genomic interval518 935-520 902 nt1 968 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span518 935-520 902 ntGCF_000155045::NZ_CM000659.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155045::NZ_CM000659.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000659.1All displayed genes belong to this local TCS context.
Neighborhood span518 935-520 902 nt1 968 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
518 935 nt520 902 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EAA_RS02000000218785GCF_000155045#EAA_RS02000000218785
HKCheACurrent focus
518 935-520 902 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155045#EAA_RS02000000218785The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0883347
Simplified PFAM architecture for HKOC_0883347
PFAM domain coverage: 461 / 655 aa (70.4%)
1 aa655 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[10-111] | P2[171-247] | H-kinase_dim[319-380] | HATPase_c[429-566] | CheW[572-653]
- Domain count: 5
- Matched identifier: HKOC_0883347
- Positioned domains: Hpt 10-111 ; P2 171-247 ; H-kinase_dim 319-380 ; HATPase_c 429-566 ; CheW 572-653
Cluster members and taxonomy
Representative gene: GCF_000155045#EAA_RS02000000218785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 499 176 · GCF_000155045
Assemblycdeaa · Chromosomehaploid
Genome composition4 036 680 bp · 28,5% GCClostridioides difficile CIP 107932
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key