1 HisKA#1
158-225 aa · 68 aa · 17.5% of protein
Raw token
HisKA:158:0.000000000000107:225:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAD_RS0202935
Histidine kinase, Classic
Clostridioides difficile QCD-97b34 · GCF_000154665
ClassHKTypeClassicLength389 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154665#QAD_RS0202935Stable P2CS identifier used across views.
GenomeGCF_000154665Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length389 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 389 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa389 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
270-379 aa · 110 aa · 28.3% of protein
Raw token
HATPase_c:270:8.98e-32:379:110:109- Raw architecture: HisKA:158:0.000000000000107:225:68:64#HATPase_c:270:8.98e-32:379:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154665::NZ_CM000657.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span494053-495917Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000154665::NZ_CM000657.1::G00008Context members
QAD_RS0202935QAD_RS0202940
Partner locus tags
QAD_RS0202935QAD_RS0202940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009899690.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAD_RS0202935Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CM000657.1Sequence record reported by the local genomic context database.
Genomic interval494 053-495 222 nt1 170 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span494 053-495 917 ntGCF_000154665::NZ_CM000657.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154665::NZ_CM000657.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000657.1All displayed genes belong to this local TCS context.
Neighborhood span494 053-495 917 nt1 865 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
494 053 nt495 917 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAD_RS0202935GCF_000154665#QAD_RS0202935
HKClassicCurrent focus
494 053-495 222 nt · Forward (+)
QAD_RS0202940GCF_000154665#QAD_RS0202940
RROmpR
495 213-495 917 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154645#UAA_RS0204550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2535492
Simplified PFAM architecture for HKOC_2535492
PFAM domain coverage: 178 / 389 aa (45.8%)
1 aa389 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-225] | HATPase_c[270-379]
- Domain count: 2
- Matched identifier: HKOC_2535492
- Positioned domains: HisKA 158-225 ; HATPase_c 270-379
Cluster members and taxonomy
Representative gene: GCF_000154645#UAA_RS0204550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 479 833 · GCF_000154665
AssemblyASM15466v1 · Chromosomehaploid
Genome composition4 063 610 bp · 28,5% GCClostridioides difficile QCD-97b34
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key