1 Response_reg#1
30-125 aa · 96 aa · 19.8% of protein
Raw token
Response_reg:30:0.00000000562:125:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
UAA_RS0200355
Response regulator, unclassified
Clostridioides difficile QCD-76w55 · GCF_000154645
ClassRRTypeunclassifiedLength485 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154645#UAA_RS0200355Stable P2CS identifier used across views.
GenomeGCF_000154645Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage96 / 485 aa (19.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:30:0.00000000562:125:96:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154645::NZ_ABHE02000060.1::G00059
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7147-8604Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000154645::NZ_ABHE02000060.1::G00059Context members
UAA_RS0200355
Partner locus tags
UAA_RS0200355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009899023.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUAA_RS0200355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_ABHE02000060.1Sequence record reported by the local genomic context database.
Genomic interval7 147-8 604 nt1 458 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 147-8 604 ntGCF_000154645::NZ_ABHE02000060.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154645::NZ_ABHE02000060.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHE02000060.1All displayed genes belong to this local TCS context.
Neighborhood span7 147-8 604 nt1 458 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 147 nt8 604 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
UAA_RS0200355GCF_000154645#UAA_RS0200355
RRunclassifiedCurrent focus
7 147-8 604 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154645#UAA_RS0200355The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0174020
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000154645#UAA_RS0200355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 479 832 · GCF_000154645
AssemblyASM15464v1 · Chromosomehaploid
Genome composition4 396 895 bp · 28,0% GCClostridioides difficile QCD-76w55
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key