Gene detail

FTDG_RS02280

Histidine kinase, Classic

Francisella tularensis subsp. novicida GA99-3548 · GCF_000154265

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000154265#FTDG_RS02280Stable P2CS identifier used across views.

GenomeGCF_000154265Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterHKOC_2866072Run 6 · 4 sequences · id 100% · cov 80% · representative

External referencesWP_196218536.1 · MIST4 FTDG_RS02280RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length323 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage163 / 323 aa (50.5%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa323 aa

Domain-by-domain annotation2 items

1 HisKA#1

116-170 aa · 55 aa · 17.0% of protein

Raw tokenHisKA:116:0.000000207:170:57:64

2 HATPase_c#2

215-322 aa · 108 aa · 33.4% of protein

Raw tokenHATPase_c:215:7.19e-24:322:108:109

Raw architecture: HisKA:116:0.000000207:170:57:64#HATPase_c:215:7.19e-24:322:108:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000154265::NZ_DS264590.1::G00003

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span429229-430939Genomic interval covered by the local TCS group.

Identifiers

Old locus tagFTDG_01021RefSeq proteinWP_196218536.1

Context group IDGCF_000154265::NZ_DS264590.1::G00003

Context members

FTDG_RS02285FTDG_RS02280

Partner locus tags

FTDG_RS02285FTDG_RS02280

Partner old locus tags

FTDG_01020FTDG_01021

Partner protein IDs

WP_003037410.1 WP_196218536.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_196218536.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFTDG_RS02280Primary locus identifier stored in the genes table.

Old locus tagFTDG_01021Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_DS264590.1Sequence record reported by the local genomic context database.

Genomic interval429 968-430 939 nt972 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span429 229-430 939 ntGCF_000154265::NZ_DS264590.1::G00003

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000154265::NZ_DS264590.1::G00003

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_DS264590.1All displayed genes belong to this local TCS context.

Neighborhood span429 229-430 939 nt1 711 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

429 229 nt430 939 nt

+-FTDG_RS02285 FTDG_RS02280

Neighborhood gene cards

2 genes in the current local neighborhood.

FTDG_RS02285GCF_000154265#FTDG_RS02285

RROmpR

429 229-429 918 nt · Forward (+)

Old locus FTDG_01020RefSeq WP_003037410.1

Open gene

FTDG_RS02280GCF_000154265#FTDG_RS02280

HKClassicCurrent focus

429 968-430 939 nt · Forward (+)

Old locus FTDG_01021RefSeq WP_196218536.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2866072HK

Run 64 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_2866072Run 6 · HK · 4 sequences

Representative sequenceGCF_000154265#FTDG_RS02280The current gene is the representative for this cluster.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2866072

Simplified PFAM architecture for HKOC_2866072

PFAM domain coverage: 164 / 323 aa (50.8%)

1 aa323 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[115-170] | HATPase_c[215-322]
Domain count: 2
Matched identifier: HKOC_2866072
Positioned domains: HisKA 115-170 ; HATPase_c 215-322

Cluster members and taxonomy

Representative gene: GCF_000154265#FTDG_RS02280

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 442 346 · GCF_000154265

AssemblyASM15426v1 · Scaffoldhaploid

Genome composition1 858 641 bp · 32,5% GCFrancisella tularensis subsp. novicida GA99-3548

Signal transduction countsGenes 6 · HK 3 · RR 3CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search HK genes NCBI assembly files

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