1 Response_reg#1
16-127 aa · 112 aa · 48.7% of protein
Raw token
Response_reg:16:1.85e-31:127:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFADO_RS08885
Response regulator NarL family
Bifidobacterium adolescentis L2-32 · GCF_000154085
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154085#BIFADO_RS08885Stable P2CS identifier used across views.
GenomeGCF_000154085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 230 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-221 aa · 57 aa · 24.8% of protein
Raw token
HTH_LUXR:165:2.36e-17:221:58:58- Raw architecture: Response_reg:16:1.85e-31:127:112:111#HTH_LUXR:165:2.36e-17:221:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154085::NZ_DS264459.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span238011-238703Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFADO_02133RefSeq proteinWP_003810625.1
Context group ID
GCF_000154085::NZ_DS264459.1::G00001Context members
BIFADO_RS08885
Partner locus tags
BIFADO_RS08885
Partner old locus tags
BIFADO_02133
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003810625.1Primary protein accession used for annex mappings.
UniProt accessionA7A8E2Primary UniProt accession resolved in the annex database.
UniProt IDA7A8E2_BIFADDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFADO_RS08885Primary locus identifier stored in the genes table.
Old locus tagBIFADO_02133Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264459.1Sequence record reported by the local genomic context database.
Genomic interval238 011-238 703 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span238 011-238 703 ntGCF_000154085::NZ_DS264459.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154085::NZ_DS264459.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264459.1All displayed genes belong to this local TCS context.
Neighborhood span238 011-238 703 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 011 nt238 703 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BIFADO_RS08885GCF_000154085#BIFADO_RS08885
RRNarLCurrent focus
238 011-238 703 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154085#BIFADO_RS08885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200117
Simplified PFAM architecture for RROC_1200117
PFAM domain coverage: 159 / 230 aa (69.1%)
1 aa230 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[15-127] | Sigma70_r4_2[159-204]
- Domain count: 2
- Matched identifier: RROC_1200117
- Positioned domains: Response_reg 15-127 ; Response_reg 15-127 ; Sigma70_r4_2 159-204 ; Sigma70_r4_2 159-204
Cluster members and taxonomy
Representative gene: GCF_000154085#BIFADO_RS08885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 481 · GCF_000154085
AssemblyASM15408v1 · Scaffoldhaploid
Genome composition2 389 110 bp · 59,5% GCBifidobacterium adolescentis L2-32
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key