1 HAMP#1
208-277 aa · 70 aa · 11.8% of protein
Raw token
HAMP:208:0.00000000000000177:277:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFADO_RS04680
Histidine kinase, Classic
Bifidobacterium adolescentis L2-32 · GCF_000154085
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154085#BIFADO_RS04680Stable P2CS identifier used across views.
GenomeGCF_000154085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 593 aa (48.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 HisKA#2
288-357 aa · 70 aa · 11.8% of protein
Raw token
HisKA:288:2.33e-16:357:70:643 HATPase_c#3
421-568 aa · 148 aa · 25.0% of protein
Raw token
HATPase_c:421:6.71e-21:568:148:109- Raw architecture: HAMP:208:0.00000000000000177:277:70:69#HisKA:288:2.33e-16:357:70:64#HATPase_c:421:6.71e-21:568:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154085::NZ_DS264454.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span811858-814445Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFADO_00885RefSeq proteinWP_003808702.1
Context group ID
GCF_000154085::NZ_DS264454.1::G00013Context members
BIFADO_RS04675BIFADO_RS04680
Partner locus tags
BIFADO_RS04675BIFADO_RS04680
Partner old locus tags
BIFADO_00884BIFADO_00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003808702.1Primary protein accession used for annex mappings.
UniProt accessionA7A4X2Primary UniProt accession resolved in the annex database.
UniProt IDA7A4X2_BIFADDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFADO_RS04680Primary locus identifier stored in the genes table.
Old locus tagBIFADO_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264454.1Sequence record reported by the local genomic context database.
Genomic interval812 664-814 445 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span811 858-814 445 ntGCF_000154085::NZ_DS264454.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154085::NZ_DS264454.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264454.1All displayed genes belong to this local TCS context.
Neighborhood span811 858-814 445 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
811 858 nt814 445 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BIFADO_RS04675GCF_000154085#BIFADO_RS04675
RROmpR
811 858-812 589 nt · Forward (+)
BIFADO_RS04680GCF_000154085#BIFADO_RS04680
HKClassicCurrent focus
812 664-814 445 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154085#BIFADO_RS04680The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1092824
Simplified PFAM architecture for HKOC_1092824
PFAM domain coverage: 269 / 593 aa (45.4%)
1 aa593 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-277] | HisKA[289-357] | HATPase_c[421-567]
- Domain count: 3
- Matched identifier: HKOC_1092824
- Positioned domains: HAMP 225-277 ; HisKA 289-357 ; HATPase_c 421-567
Cluster members and taxonomy
Representative gene: GCF_000154085#BIFADO_RS04680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 481 · GCF_000154085
AssemblyASM15408v1 · Scaffoldhaploid
Genome composition2 389 110 bp · 59,5% GCBifidobacterium adolescentis L2-32
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key