1 Response_reg#1
4-116 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:4:4.43e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORLON_RS11630
Response regulator NarL family
Dorea longicatena DSM 13814 · GCF_000154065
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154065#DORLON_RS11630Stable P2CS identifier used across views.
GenomeGCF_000154065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 223 aa (75.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-211 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:157:1.01e-17:211:55:58- Raw architecture: Response_reg:4:4.43e-33:116:113:111#HTH_LUXR:157:1.01e-17:211:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154065::NZ_DS264415.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span390960-392946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORLON_00414RefSeq proteinWP_006428511.1
Context group ID
GCF_000154065::NZ_DS264415.1::G00009Context members
DORLON_RS11625DORLON_RS11630
Partner locus tags
DORLON_RS11625DORLON_RS11630
Partner old locus tags
DORLON_00413DORLON_00414
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428511.1Primary protein accession used for annex mappings.
UniProt accessionA6BDP8Primary UniProt accession resolved in the annex database.
UniProt IDA6BDP8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORLON_RS11630Primary locus identifier stored in the genes table.
Old locus tagDORLON_00414Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264415.1Sequence record reported by the local genomic context database.
Genomic interval392 275-392 946 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span390 960-392 946 ntGCF_000154065::NZ_DS264415.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154065::NZ_DS264415.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264415.1All displayed genes belong to this local TCS context.
Neighborhood span390 960-392 946 nt1 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
390 960 nt392 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORLON_RS11625GCF_000154065#DORLON_RS11625
HKClassic
390 960-392 282 nt · Forward (+)
DORLON_RS11630GCF_000154065#DORLON_RS11630
RRNarLCurrent focus
392 275-392 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11630The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587342
Simplified PFAM architecture for RROC_1587342
PFAM domain coverage: 169 / 223 aa (75.8%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[156-211]
- Domain count: 2
- Matched identifier: RROC_1587342
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 156-211 ; GerE 156-211
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 462 · GCF_000154065
AssemblyASM15406v1 · Scaffoldhaploid
Genome composition2 915 433 bp · 41,5% GCDorea longicatena DSM 13814
Signal transduction countsGenes 64 · HK 31 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key