1 Response_reg#1
5-105 aa · 101 aa · 18.4% of protein
Raw token
Response_reg:5:7.37e-31:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORLON_RS11405
Response regulator, unclassified
Dorea longicatena DSM 13814 · GCF_000154065
ClassRRTypeunclassifiedLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154065#DORLON_RS11405Stable P2CS identifier used across views.
GenomeGCF_000154065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage169 / 550 aa (30.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
467-497 aa · 31 aa · 5.6% of protein
Raw token
HTH_AraC:467:0.0000862:497:31:423 HTH_AraC#3
512-548 aa · 37 aa · 6.7% of protein
Raw token
HTH_AraC:512:0.00000000354:548:37:42- Raw architecture: Response_reg:5:7.37e-31:105:102:111#HTH_AraC:467:0.0000862:497:31:42#HTH_AraC:512:0.00000000354:548:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154065::NZ_DS264415.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span343057-346439Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORLON_00367RefSeq proteinWP_006428465.1
Context group ID
GCF_000154065::NZ_DS264415.1::G00008Context members
DORLON_RS11400DORLON_RS11405
Partner locus tags
DORLON_RS11400DORLON_RS11405
Partner old locus tags
DORLON_00366DORLON_00367
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428465.1Primary protein accession used for annex mappings.
UniProt accessionA6BDK1Primary UniProt accession resolved in the annex database.
UniProt IDA6BDK1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORLON_RS11405Primary locus identifier stored in the genes table.
Old locus tagDORLON_00367Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264415.1Sequence record reported by the local genomic context database.
Genomic interval344 787-346 439 nt1 653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span343 057-346 439 ntGCF_000154065::NZ_DS264415.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154065::NZ_DS264415.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264415.1All displayed genes belong to this local TCS context.
Neighborhood span343 057-346 439 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
343 057 nt346 439 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORLON_RS11400GCF_000154065#DORLON_RS11400
HKClassic
343 057-344 790 nt · Forward (+)
DORLON_RS11405GCF_000154065#DORLON_RS11405
RRunclassifiedCurrent focus
344 787-346 439 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0073597
Simplified PFAM architecture for RROC_0073597
PFAM domain coverage: 187 / 550 aa (34.0%)
1 aa550 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[471-548]
- Domain count: 2
- Matched identifier: RROC_0073597
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 471-548 ; HTH_18 471-548
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 462 · GCF_000154065
AssemblyASM15406v1 · Scaffoldhaploid
Genome composition2 915 433 bp · 41,5% GCDorea longicatena DSM 13814
Signal transduction countsGenes 64 · HK 31 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key