1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:5.37e-28:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORLON_RS07195
Response regulator OmpR family
Dorea longicatena DSM 13814 · GCF_000154065
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154065#DORLON_RS07195Stable P2CS identifier used across views.
GenomeGCF_000154065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:153:1.53e-24:228:77:77- Raw architecture: Response_reg:3:5.37e-28:113:112:111#Trans_reg_C:153:1.53e-24:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154065::NZ_DS264402.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33663-35365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORLON_02433RefSeq proteinWP_006427593.1
Context group ID
GCF_000154065::NZ_DS264402.1::G00016Context members
DORLON_RS07190DORLON_RS07195
Partner locus tags
DORLON_RS07190DORLON_RS07195
Partner old locus tags
DORLON_02432DORLON_02433
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006427593.1Primary protein accession used for annex mappings.
UniProt accessionA6BJD8Primary UniProt accession resolved in the annex database.
UniProt IDA6BJD8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORLON_RS07195Primary locus identifier stored in the genes table.
Old locus tagDORLON_02433Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264402.1Sequence record reported by the local genomic context database.
Genomic interval34 679-35 365 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 663-35 365 ntGCF_000154065::NZ_DS264402.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154065::NZ_DS264402.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264402.1All displayed genes belong to this local TCS context.
Neighborhood span33 663-35 365 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 663 nt35 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORLON_RS07190GCF_000154065#DORLON_RS07190
HKClassic
33 663-34 682 nt · Reverse (-)
DORLON_RS07195GCF_000154065#DORLON_RS07195
RROmpRCurrent focus
34 679-35 365 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS07195The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302077
Simplified PFAM architecture for RROC_1302077
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1302077
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS07195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 462 · GCF_000154065
AssemblyASM15406v1 · Scaffoldhaploid
Genome composition2 915 433 bp · 41,5% GCDorea longicatena DSM 13814
Signal transduction countsGenes 64 · HK 31 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key