1 Response_reg#1
4-111 aa · 108 aa · 97.3% of protein
Raw token
Response_reg:4:1.03e-31:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORLON_RS05555
Response regulator, CheY family
Dorea longicatena DSM 13814 · GCF_000154065
ClassRRTypeCheYLength111 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154065#DORLON_RS05555Stable P2CS identifier used across views.
GenomeGCF_000154065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length111 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 111 aa (97.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa111 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.03e-31:111:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154065::NZ_DS264397.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-335Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORLON_02993RefSeq proteinWP_006427244.1
Context group ID
GCF_000154065::NZ_DS264397.1::G00019Context members
DORLON_RS05555
Partner locus tags
DORLON_RS05555
Partner old locus tags
DORLON_02993
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006427244.1Primary protein accession used for annex mappings.
UniProt accessionA6BKY2Primary UniProt accession resolved in the annex database.
UniProt IDA6BKY2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORLON_RS05555Primary locus identifier stored in the genes table.
Old locus tagDORLON_02993Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264397.1Sequence record reported by the local genomic context database.
Genomic interval1-335 nt335 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-335 ntGCF_000154065::NZ_DS264397.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154065::NZ_DS264397.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264397.1All displayed genes belong to this local TCS context.
Neighborhood span1-335 nt335 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt335 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORLON_RS05555GCF_000154065#DORLON_RS05555
RRCheYCurrent focus
1-335 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS01610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1722991
Simplified PFAM architecture for RROC_1722991
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1722991
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS01610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 462 · GCF_000154065
AssemblyASM15406v1 · Scaffoldhaploid
Genome composition2 915 433 bp · 41,5% GCDorea longicatena DSM 13814
Signal transduction countsGenes 64 · HK 31 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key