1 HAMP#1
317-379 aa · 63 aa · 10.2% of protein
Raw token
HAMP:317:0.00000000558:379:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMOBE_RS14840
Histidine kinase, Classic
Blautia obeum ATCC 29174 · GCF_000153905
ClassHKTypeClassicLength618 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153905#RUMOBE_RS14840Stable P2CS identifier used across views.
GenomeGCF_000153905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length618 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 618 aa (40.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa618 aa
Domain-by-domain annotation3 items
2 His_kinase#2
400-479 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:400:5.76e-29:479:80:803 HATPase_c#3
499-604 aa · 106 aa · 17.2% of protein
Raw token
HATPase_c:499:0.000000000000391:604:109:109- Raw architecture: HAMP:317:0.00000000558:379:63:69#His_kinase:400:5.76e-29:479:80:80#HATPase_c:499:0.000000000000391:604:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153905::NZ_DS264340.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35657-39066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMOBE_00041RefSeq proteinWP_005427639.1
Context group ID
GCF_000153905::NZ_DS264340.1::G00001Context members
RUMOBE_RS14835RUMOBE_RS14840
Partner locus tags
RUMOBE_RS14835RUMOBE_RS14840
Partner old locus tags
RUMOBE_00040RUMOBE_00041
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005427639.1Primary protein accession used for annex mappings.
UniProt accessionA5ZM24Primary UniProt accession resolved in the annex database.
UniProt IDA5ZM24_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMOBE_RS14840Primary locus identifier stored in the genes table.
Old locus tagRUMOBE_00041Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264340.1Sequence record reported by the local genomic context database.
Genomic interval37 210-39 066 nt1 857 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 657-39 066 ntGCF_000153905::NZ_DS264340.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153905::NZ_DS264340.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264340.1All displayed genes belong to this local TCS context.
Neighborhood span35 657-39 066 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 657 nt39 066 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMOBE_RS14835GCF_000153905#RUMOBE_RS14835
RRunclassified
35 657-37 213 nt · Forward (+)
RUMOBE_RS14840GCF_000153905#RUMOBE_RS14840
HKClassicCurrent focus
37 210-39 066 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS14840The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0977606
Simplified PFAM architecture for HKOC_0977606
PFAM domain coverage: 184 / 618 aa (29.8%)
1 aa618 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[400-478] | HATPase_c[499-603]
- Domain count: 2
- Matched identifier: HKOC_0977606
- Positioned domains: His_kinase 400-478 ; HATPase_c 499-603
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS14840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 459 · GCF_000153905
AssemblyASM15390v1 · Scaffoldhaploid
Genome composition3 625 508 bp · 41,5% GCBlautia obeum ATCC 29174
Signal transduction countsGenes 86 · HK 45 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key