1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.1e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9496_RS16185
Response regulator OmpR family
Enterococcus faecalis TX4000 · GCF_000148445
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148445#HMPREF9496_RS16185Stable P2CS identifier used across views.
GenomeGCF_000148445Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:152:1.44e-27:228:77:77- Raw architecture: Response_reg:5:1.1e-33:114:111:111#Trans_reg_C:152:1.44e-27:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148445::NZ_GL476297.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104899-106931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9496_02667RefSeq proteinWP_002355236.1
Context group ID
GCF_000148445::NZ_GL476297.1::G00014Context members
HMPREF9496_RS16180HMPREF9496_RS16185
Partner locus tags
HMPREF9496_RS16180HMPREF9496_RS16185
Partner old locus tags
HMPREF9496_02666HMPREF9496_02667
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355236.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TKM9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TKM9_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9496_RS16185Primary locus identifier stored in the genes table.
Old locus tagHMPREF9496_02667Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL476297.1Sequence record reported by the local genomic context database.
Genomic interval106 239-106 931 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 899-106 931 ntGCF_000148445::NZ_GL476297.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148445::NZ_GL476297.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL476297.1All displayed genes belong to this local TCS context.
Neighborhood span104 899-106 931 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 899 nt106 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9496_RS16180GCF_000148445#HMPREF9496_RS16180
HKClassic
104 899-106 242 nt · Forward (+)
HMPREF9496_RS16185GCF_000148445#HMPREF9496_RS16185
RROmpRCurrent focus
106 239-106 931 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS01860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199643
Simplified PFAM architecture for RROC_1199643
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1199643
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 493 · GCF_000148445
AssemblyASM14844v1 · Scaffoldhaploid
Genome composition2 840 305 bp · 37,5% GCEnterococcus faecalis TX4000
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key