1 HisKA#1
91-152 aa · 62 aa · 20.1% of protein
Raw token
HisKA:91:0.000000188:152:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9496_RS14430
Histidine kinase, Classic
Enterococcus faecalis TX4000 · GCF_000148445
ClassHKTypeClassicLength308 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148445#HMPREF9496_RS14430Stable P2CS identifier used across views.
GenomeGCF_000148445Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 308 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-304 aa · 105 aa · 34.1% of protein
Raw token
HATPase_c:200:3.83e-31:304:105:109- Raw architecture: HisKA:91:0.000000188:152:62:64#HATPase_c:200:3.83e-31:304:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148445::NZ_GL476291.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90378-92003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9496_02304RefSeq proteinWP_002388726.1
Context group ID
GCF_000148445::NZ_GL476291.1::G00012Context members
HMPREF9496_RS14430HMPREF9496_RS14435
Partner locus tags
HMPREF9496_RS14430HMPREF9496_RS14435
Partner old locus tags
HMPREF9496_02304HMPREF9496_02305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002388726.1Primary protein accession used for annex mappings.
UniProt accessionA0A4Y6HS46Primary UniProt accession resolved in the annex database.
UniProt IDA0A4Y6HS46_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9496_RS14430Primary locus identifier stored in the genes table.
Old locus tagHMPREF9496_02304Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL476291.1Sequence record reported by the local genomic context database.
Genomic interval90 378-91 304 nt927 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 378-92 003 ntGCF_000148445::NZ_GL476291.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148445::NZ_GL476291.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL476291.1All displayed genes belong to this local TCS context.
Neighborhood span90 378-92 003 nt1 626 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 378 nt92 003 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9496_RS14430GCF_000148445#HMPREF9496_RS14430
HKClassicCurrent focus
90 378-91 304 nt · Reverse (-)
HMPREF9496_RS14435GCF_000148445#HMPREF9496_RS14435
RROmpR
91 308-92 003 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148445#HMPREF9496_RS14430The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879923
Simplified PFAM architecture for HKOC_2879923
PFAM domain coverage: 170 / 308 aa (55.2%)
1 aa308 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[90-152] | HATPase_c[200-306]
- Domain count: 2
- Matched identifier: HKOC_2879923
- Positioned domains: HisKA 90-152 ; HATPase_c 200-306
Cluster members and taxonomy
Representative gene: GCF_000148445#HMPREF9496_RS14430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 493 · GCF_000148445
AssemblyASM14844v1 · Scaffoldhaploid
Genome composition2 840 305 bp · 37,5% GCEnterococcus faecalis TX4000
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key