1 HAMP#1
54-123 aa · 70 aa · 20.2% of protein
Raw token
HAMP:54:0.0000000125:123:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9524_RS10155
Histidine kinase, Classic
Enterococcus faecium TX0133a01 · GCF_000148325
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148325#HMPREF9524_RS10155Stable P2CS identifier used across views.
GenomeGCF_000148325Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 346 aa (70.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HisKA#2
129-194 aa · 66 aa · 19.1% of protein
Raw token
HisKA:129:0.0000000000000119:194:66:643 HATPase_c#3
238-344 aa · 107 aa · 30.9% of protein
Raw token
HATPase_c:238:7.11e-32:344:107:109- Raw architecture: HAMP:54:0.0000000125:123:70:69#HisKA:129:0.0000000000000119:194:66:64#HATPase_c:238:7.11e-32:344:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148325::NZ_GL476143.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27410-29121Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9524_02183RefSeq proteinWP_002301716.1
Context group ID
GCF_000148325::NZ_GL476143.1::G00016Context members
HMPREF9524_RS10155HMPREF9524_RS10160
Partner locus tags
HMPREF9524_RS10155HMPREF9524_RS10160
Partner old locus tags
HMPREF9524_02183HMPREF9524_02184
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002301716.1Primary protein accession used for annex mappings.
UniProt accessionA0AB73NMP5Primary UniProt accession resolved in the annex database.
UniProt IDA0AB73NMP5_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9524_RS10155Primary locus identifier stored in the genes table.
Old locus tagHMPREF9524_02183Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL476143.1Sequence record reported by the local genomic context database.
Genomic interval27 410-28 450 nt1 041 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 410-29 121 ntGCF_000148325::NZ_GL476143.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148325::NZ_GL476143.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL476143.1All displayed genes belong to this local TCS context.
Neighborhood span27 410-29 121 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 410 nt29 121 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9524_RS10155GCF_000148325#HMPREF9524_RS10155
HKClassicCurrent focus
27 410-28 450 nt · Reverse (-)
HMPREF9524_RS10160GCF_000148325#HMPREF9524_RS10160
RROmpR
28 453-29 121 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS10515Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2815358
Simplified PFAM architecture for HKOC_2815358
PFAM domain coverage: 225 / 346 aa (65.0%)
1 aa346 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[71-123] | HisKA[129-193] | HATPase_c[238-344]
- Domain count: 3
- Matched identifier: HKOC_2815358
- Positioned domains: HAMP 71-123 ; HisKA 129-193 ; HATPase_c 238-344
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS10515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 522 · GCF_000148325
AssemblyASM14832v1 · Scaffoldhaploid
Genome composition3 073 581 bp · 37,5% GCEnterococcus faecium TX0133a01
Signal transduction countsGenes 39 · HK 18 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key