1 Response_reg#1
4-115 aa · 112 aa · 48.7% of protein
Raw token
Response_reg:4:3.54e-24:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9499_RS05035
Response regulator, unclassified
Enterococcus faecalis TX0012 · GCF_000148245
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000148245#HMPREF9499_RS05035Stable P2CS identifier used across views.
GenomeGCF_000148245Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 230 aa (48.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.54e-24:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000148245::NZ_GL456481.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27326-28018Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9499_00381RefSeq proteinWP_002378212.1
Context group ID
GCF_000148245::NZ_GL456481.1::G00003Context members
HMPREF9499_RS05035
Partner locus tags
HMPREF9499_RS05035
Partner old locus tags
HMPREF9499_00381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002378212.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9499_RS05035Primary locus identifier stored in the genes table.
Old locus tagHMPREF9499_00381Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL456481.1Sequence record reported by the local genomic context database.
Genomic interval27 326-28 018 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 326-28 018 ntGCF_000148245::NZ_GL456481.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148245::NZ_GL456481.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL456481.1All displayed genes belong to this local TCS context.
Neighborhood span27 326-28 018 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 326 nt28 018 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9499_RS05035GCF_000148245#HMPREF9499_RS05035
RRunclassifiedCurrent focus
27 326-28 018 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147295#HMPREF9497_RS09150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1200060
Simplified PFAM architecture for RROC_1200060
PFAM domain coverage: 111 / 230 aa (48.3%)
1 aa230 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_1200060
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_000147295#HMPREF9497_RS09150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 496 · GCF_000148245
AssemblyASM14824v1 · Scaffoldhaploid
Genome composition2 818 531 bp · 37,5% GCEnterococcus faecalis TX0012
Signal transduction countsGenes 25 · HK 11 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key