1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:3.05e-38:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9517_RS05225
Response regulator OmpR family
Enterococcus faecalis TX1341 · GCF_000148225
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148225#HMPREF9517_RS05225Stable P2CS identifier used across views.
GenomeGCF_000148225Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:155:4.91e-36:231:77:77- Raw architecture: Response_reg:4:3.05e-38:112:109:111#Trans_reg_C:155:4.91e-36:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148225::NZ_GL457165.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59293-61775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9517_00351RefSeq proteinWP_002357427.1
Context group ID
GCF_000148225::NZ_GL457165.1::G00002Context members
HMPREF9517_RS05220HMPREF9517_RS05225
Partner locus tags
HMPREF9517_RS05220HMPREF9517_RS05225
Partner old locus tags
HMPREF9517_00350HMPREF9517_00351
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002357427.1Primary protein accession used for annex mappings.
UniProt accessionQ834F2Primary UniProt accession resolved in the annex database.
UniProt IDQ834F2_ENTFADisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9517_RS05225Primary locus identifier stored in the genes table.
Old locus tagHMPREF9517_00351Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL457165.1Sequence record reported by the local genomic context database.
Genomic interval61 065-61 775 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 293-61 775 ntGCF_000148225::NZ_GL457165.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148225::NZ_GL457165.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL457165.1All displayed genes belong to this local TCS context.
Neighborhood span59 293-61 775 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 293 nt61 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9517_RS05220GCF_000148225#HMPREF9517_RS05220
HKClassic
59 293-61 068 nt · Reverse (-)
HMPREF9517_RS05225GCF_000148225#HMPREF9517_RS05225
RROmpRCurrent focus
61 065-61 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS08185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988187
Simplified PFAM architecture for RROC_0988187
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0988187
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS08185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 514 · GCF_000148225
AssemblyASM14822v1 · Scaffoldhaploid
Genome composition2 999 992 bp · 37,0% GCEnterococcus faecalis TX1341
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key