1 Response_reg#1
3-113 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:3:2.42e-24:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9512_RS19385
Response regulator LytTR family
Enterococcus faecalis EnGen0311 · GCF_000148125
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148125#HMPREF9512_RS19385Stable P2CS identifier used across views.
GenomeGCF_000148125Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 242 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-240 aa · 98 aa · 40.5% of protein
Raw token
LytTR:143:1.51e-39:240:98:98- Raw architecture: Response_reg:3:2.42e-24:113:113:111#LytTR:143:1.51e-39:240:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148125::NZ_GL455410.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span225833-228311Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9512_03240RefSeq proteinWP_002380989.1
Context group ID
GCF_000148125::NZ_GL455410.1::G00016Context members
HMPREF9512_RS19385HMPREF9512_RS19390
Partner locus tags
HMPREF9512_RS19385HMPREF9512_RS19390
Partner old locus tags
HMPREF9512_03240HMPREF9512_03241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002380989.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9P9T0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9P9T0_ENTFLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9512_RS19385Primary locus identifier stored in the genes table.
Old locus tagHMPREF9512_03240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455410.1Sequence record reported by the local genomic context database.
Genomic interval225 833-226 561 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span225 833-228 311 ntGCF_000148125::NZ_GL455410.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148125::NZ_GL455410.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455410.1All displayed genes belong to this local TCS context.
Neighborhood span225 833-228 311 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
225 833 nt228 311 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9512_RS19385GCF_000148125#HMPREF9512_RS19385
RRLytTRCurrent focus
225 833-226 561 nt · Reverse (-)
HMPREF9512_RS19390GCF_000148125#HMPREF9512_RS19390
HKClassic
226 542-228 311 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS05220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843593
Simplified PFAM architecture for RROC_0843593
PFAM domain coverage: 207 / 242 aa (85.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[143-239]
- Domain count: 2
- Matched identifier: RROC_0843593
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 143-239 ; LytTR 143-239
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS05220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 509 · GCF_000148125
AssemblyASM14812v1 · Scaffoldhaploid
Genome composition3 168 692 bp · 37,0% GCEnterococcus faecalis EnGen0311
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key