1 Response_reg#1
5-116 aa · 112 aa · 58.9% of protein
Raw token
Response_reg:5:4.07e-28:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9515_RS05255
Response regulator, AmiR_NasR family
Enterococcus faecalis TX0860 · GCF_000148085
ClassRRTypeAmiR_NasRLength190 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148085#HMPREF9515_RS05255Stable P2CS identifier used across views.
GenomeGCF_000148085Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length190 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 190 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa190 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.8% of protein
Raw token
ANTAR:138:1.3e-18:186:49:49- Raw architecture: Response_reg:5:4.07e-28:116:112:111#ANTAR:138:1.3e-18:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148085::NZ_GL455491.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span203724-205730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9515_00335RefSeq proteinWP_002384488.1
Context group ID
GCF_000148085::NZ_GL455491.1::G00003Context members
HMPREF9515_RS05255HMPREF9515_RS05260
Partner locus tags
HMPREF9515_RS05255HMPREF9515_RS05260
Partner old locus tags
HMPREF9515_00335HMPREF9515_00336
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002384488.1Primary protein accession used for annex mappings.
UniProt accessionQ834L5Primary UniProt accession resolved in the annex database.
UniProt IDQ834L5_ENTFADisplay identifier provided by UniProt.
GO / PubMed3 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9515_RS05255Primary locus identifier stored in the genes table.
Old locus tagHMPREF9515_00335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455491.1Sequence record reported by the local genomic context database.
Genomic interval203 724-204 296 nt573 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span203 724-205 730 ntGCF_000148085::NZ_GL455491.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148085::NZ_GL455491.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455491.1All displayed genes belong to this local TCS context.
Neighborhood span203 724-205 730 nt2 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 724 nt205 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9515_RS05255GCF_000148085#HMPREF9515_RS05255
RRAmiR_NasRCurrent focus
203 724-204 296 nt · Forward (+)
HMPREF9515_RS05260GCF_000148085#HMPREF9515_RS05260
HKClassic
204 297-205 730 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS07855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2170280
Simplified PFAM architecture for RROC_2170280
PFAM domain coverage: 164 / 190 aa (86.3%)
1 aa190 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-115] | ANTAR[134-186]
- Domain count: 2
- Matched identifier: RROC_2170280
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; ANTAR 134-186 ; ANTAR 134-186
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS07855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 512 · GCF_000148085
AssemblyASM14808v1 · Scaffoldhaploid
Genome composition3 061 766 bp · 37,0% GCEnterococcus faecalis TX0860
Signal transduction countsGenes 28 · HK 13 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key