1 Response_reg#1
3-108 aa · 106 aa · 53.8% of protein
Raw token
Response_reg:3:5.92e-19:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9521_RS17310
Response regulator NarL family
Enterococcus faecalis TX2134 · GCF_000148065
ClassRRTypeNarLLength197 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000148065#HMPREF9521_RS17310Stable P2CS identifier used across views.
GenomeGCF_000148065Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length197 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 197 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa197 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
129-186 aa · 58 aa · 29.4% of protein
Raw token
HTH_LUXR:129:7.21e-18:186:58:58- Raw architecture: Response_reg:3:5.92e-19:108:106:111#HTH_LUXR:129:7.21e-18:186:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000148065::NZ_GL455626.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span95906-96499Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9521_02803RefSeq proteinWP_002404121.1
Context group ID
GCF_000148065::NZ_GL455626.1::G00013Context members
HMPREF9521_RS17310
Partner locus tags
HMPREF9521_RS17310
Partner old locus tags
HMPREF9521_02803
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002404121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9521_RS17310Primary locus identifier stored in the genes table.
Old locus tagHMPREF9521_02803Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455626.1Sequence record reported by the local genomic context database.
Genomic interval95 906-96 499 nt594 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 906-96 499 ntGCF_000148065::NZ_GL455626.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148065::NZ_GL455626.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455626.1All displayed genes belong to this local TCS context.
Neighborhood span95 906-96 499 nt594 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 906 nt96 499 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9521_RS17310GCF_000148065#HMPREF9521_RS17310
RRNarLCurrent focus
95 906-96 499 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148065#HMPREF9521_RS17310The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2152178
Simplified PFAM architecture for RROC_2152178
PFAM domain coverage: 164 / 197 aa (83.2%)
1 aa197 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-111] | GerE[130-184]
- Domain count: 2
- Matched identifier: RROC_2152178
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; GerE 130-184 ; GerE 130-184
Cluster members and taxonomy
Representative gene: GCF_000148065#HMPREF9521_RS17310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 518 · GCF_000148065
AssemblyASM14806v1 · Scaffoldhaploid
Genome composition3 121 432 bp · 37,0% GCEnterococcus faecalis TX2134
Signal transduction countsGenes 31 · HK 15 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key