1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.1e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9521_RS07905
Response regulator OmpR family
Enterococcus faecalis TX2134 · GCF_000148065
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148065#HMPREF9521_RS07905Stable P2CS identifier used across views.
GenomeGCF_000148065Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:152:1.44e-27:228:77:77- Raw architecture: Response_reg:5:1.1e-33:114:111:111#Trans_reg_C:152:1.44e-27:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148065::NZ_GL455601.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43341-45373Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9521_00861RefSeq proteinWP_002355236.1
Context group ID
GCF_000148065::NZ_GL455601.1::G00005Context members
HMPREF9521_RS07900HMPREF9521_RS07905
Partner locus tags
HMPREF9521_RS07900HMPREF9521_RS07905
Partner old locus tags
HMPREF9521_00860HMPREF9521_00861
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355236.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TKM9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TKM9_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9521_RS07905Primary locus identifier stored in the genes table.
Old locus tagHMPREF9521_00861Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455601.1Sequence record reported by the local genomic context database.
Genomic interval44 681-45 373 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 341-45 373 ntGCF_000148065::NZ_GL455601.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148065::NZ_GL455601.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455601.1All displayed genes belong to this local TCS context.
Neighborhood span43 341-45 373 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 341 nt45 373 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9521_RS07900GCF_000148065#HMPREF9521_RS07900
HKClassic
43 341-44 684 nt · Forward (+)
HMPREF9521_RS07905GCF_000148065#HMPREF9521_RS07905
RROmpRCurrent focus
44 681-45 373 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS01860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199643
Simplified PFAM architecture for RROC_1199643
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1199643
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 518 · GCF_000148065
AssemblyASM14806v1 · Scaffoldhaploid
Genome composition3 121 432 bp · 37,0% GCEnterococcus faecalis TX2134
Signal transduction countsGenes 31 · HK 15 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key