1 Response_reg#1
3-111 aa · 109 aa · 54.0% of protein
Raw token
Response_reg:3:0.00000000000000642:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9498_RS05575
Response regulator NarL family
Enterococcus faecalis TX4248 · GCF_000147925
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147925#HMPREF9498_RS05575Stable P2CS identifier used across views.
GenomeGCF_000147925Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 202 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
138-191 aa · 54 aa · 26.7% of protein
Raw token
HTH_LUXR:138:0.0000000000169:191:54:58- Raw architecture: Response_reg:3:0.00000000000000642:111:111:111#HTH_LUXR:138:0.0000000000169:191:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147925::NZ_GL454414.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33316-33924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9498_00354RefSeq proteinWP_002361211.1
Context group ID
GCF_000147925::NZ_GL454414.1::G00002Context members
HMPREF9498_RS05575
Partner locus tags
HMPREF9498_RS05575
Partner old locus tags
HMPREF9498_00354
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002361211.1Primary protein accession used for annex mappings.
UniProt accessionA0A125W9E6Primary UniProt accession resolved in the annex database.
UniProt IDA0A125W9E6_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9498_RS05575Primary locus identifier stored in the genes table.
Old locus tagHMPREF9498_00354Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454414.1Sequence record reported by the local genomic context database.
Genomic interval33 316-33 924 nt609 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 316-33 924 ntGCF_000147925::NZ_GL454414.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147925::NZ_GL454414.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454414.1All displayed genes belong to this local TCS context.
Neighborhood span33 316-33 924 nt609 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 316 nt33 924 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9498_RS05575GCF_000147925#HMPREF9498_RS05575
RRNarLCurrent focus
33 316-33 924 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS13470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114778
Simplified PFAM architecture for RROC_2114778
PFAM domain coverage: 164 / 202 aa (81.2%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-113] | GerE[137-189]
- Domain count: 2
- Matched identifier: RROC_2114778
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; GerE 137-189 ; GerE 137-189
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS13470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 495 · GCF_000147925
AssemblyASM14792v1 · Scaffoldhaploid
Genome composition3 187 019 bp · 37,0% GCEnterococcus faecalis TX4248
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key