1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000254:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9500_RS07965
Histidine kinase, Classic
Enterococcus faecalis TX0017 · GCF_000147905
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147905#HMPREF9500_RS07965Stable P2CS identifier used across views.
GenomeGCF_000147905Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 439 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000409:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.0000057:419:90:109- Raw architecture: HAMP:144:0.00000254:211:70:69#HisKA:232:0.00000409:296:65:64#HATPase_c:342:0.0000057:419:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147905::NZ_GL454165.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5157-7126Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9500_00897RefSeq proteinWP_002297866.1
Context group ID
GCF_000147905::NZ_GL454165.1::G00006Context members
HMPREF9500_RS07965HMPREF9500_RS07970
Partner locus tags
HMPREF9500_RS07965HMPREF9500_RS07970
Partner old locus tags
HMPREF9500_00897HMPREF9500_00898
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002297866.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9P5G3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9P5G3_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9500_RS07965Primary locus identifier stored in the genes table.
Old locus tagHMPREF9500_00897Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454165.1Sequence record reported by the local genomic context database.
Genomic interval5 157-6 476 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 157-7 126 ntGCF_000147905::NZ_GL454165.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147905::NZ_GL454165.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454165.1All displayed genes belong to this local TCS context.
Neighborhood span5 157-7 126 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 157 nt7 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9500_RS07965GCF_000147905#HMPREF9500_RS07965
HKClassicCurrent focus
5 157-6 476 nt · Reverse (-)
HMPREF9500_RS07970GCF_000147905#HMPREF9500_RS07970
RROmpR
6 473-7 126 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS13205Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2082275
Simplified PFAM architecture for HKOC_2082275
PFAM domain coverage: 147 / 439 aa (33.5%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-424]
- Domain count: 2
- Matched identifier: HKOC_2082275
- Positioned domains: HisKA 233-296 ; HATPase_c 342-424
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS13205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 497 · GCF_000147905
AssemblyASM14790v1 · Scaffoldhaploid
Genome composition2 997 067 bp · 37,5% GCEnterococcus faecalis TX0017
Signal transduction countsGenes 28 · HK 13 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key