1 sCache_like#1
36-155 aa · 120 aa · 20.3% of protein
Raw token
sCache_like:36:0.000000000299:155:121:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9501_RS05705
Histidine kinase, Classic
Enterococcus faecalis TX0027 · GCF_000147535
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147535#HMPREF9501_RS05705Stable P2CS identifier used across views.
GenomeGCF_000147535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_4HisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage395 / 591 aa (66.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 PAS_4#2
256-361 aa · 106 aa · 17.9% of protein
Raw token
PAS_4:256:0.00000000291:361:111:1103 HisKA#3
365-428 aa · 64 aa · 10.8% of protein
Raw token
HisKA:365:4.71e-16:428:64:644 HATPase_c#4
484-588 aa · 105 aa · 17.8% of protein
Raw token
HATPase_c:484:1.15e-31:588:105:109- Raw architecture: sCache_like:36:0.000000000299:155:121:114#PAS_4:256:0.00000000291:361:111:110#HisKA:365:4.71e-16:428:64:64#HATPase_c:484:1.15e-31:588:105:109
- Domain description: 1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147535::NZ_GL454352.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span392905-395387Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9501_00426RefSeq proteinWP_002390658.1
Context group ID
GCF_000147535::NZ_GL454352.1::G00003Context members
HMPREF9501_RS05700HMPREF9501_RS05705
Partner locus tags
HMPREF9501_RS05700HMPREF9501_RS05705
Partner old locus tags
HMPREF9501_00425HMPREF9501_00426
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002390658.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TMN7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TMN7_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9501_RS05705Primary locus identifier stored in the genes table.
Old locus tagHMPREF9501_00426Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454352.1Sequence record reported by the local genomic context database.
Genomic interval393 612-395 387 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span392 905-395 387 ntGCF_000147535::NZ_GL454352.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147535::NZ_GL454352.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454352.1All displayed genes belong to this local TCS context.
Neighborhood span392 905-395 387 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
392 905 nt395 387 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9501_RS05700GCF_000147535#HMPREF9501_RS05700
RROmpR
392 905-393 615 nt · Forward (+)
HMPREF9501_RS05705GCF_000147535#HMPREF9501_RS05705
HKClassicCurrent focus
393 612-395 387 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147535#HMPREF9501_RS05705The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1105110
Simplified PFAM architecture for HKOC_1105110
PFAM domain coverage: 276 / 591 aa (46.7%)
1 aa591 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[256-360] | HisKA[366-429] | HATPase_c[481-587]
- Domain count: 3
- Matched identifier: HKOC_1105110
- Positioned domains: PAS_4 256-360 ; HisKA 366-429 ; HATPase_c 481-587
Cluster members and taxonomy
Representative gene: GCF_000147535#HMPREF9501_RS05705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 498 · GCF_000147535
AssemblyASM14753v1 · Scaffoldhaploid
Genome composition3 061 659 bp · 37,0% GCEnterococcus faecalis TX0027
Signal transduction countsGenes 28 · HK 13 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key