1 HAMP#1
182-247 aa · 66 aa · 13.6% of protein
Raw token
HAMP:182:0.00000000000000889:247:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9518_RS13660
Histidine kinase, Classic
Enterococcus faecalis TX1342 · GCF_000147475
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147475#HMPREF9518_RS13660Stable P2CS identifier used across views.
GenomeGCF_000147475Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 485 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-324 aa · 67 aa · 13.8% of protein
Raw token
HisKA:258:0.00000000000000538:324:67:643 HATPase_c#3
369-478 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:369:1.48e-30:478:110:109- Raw architecture: HAMP:182:0.00000000000000889:247:66:69#HisKA:258:0.00000000000000538:324:67:64#HATPase_c:369:1.48e-30:478:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147475::NZ_GL454585.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78441-80617Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9518_02171RefSeq proteinWP_002397206.1
Context group ID
GCF_000147475::NZ_GL454585.1::G00013Context members
HMPREF9518_RS13655HMPREF9518_RS13660
Partner locus tags
HMPREF9518_RS13655HMPREF9518_RS13660
Partner old locus tags
HMPREF9518_02170HMPREF9518_02171
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002397206.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9518_RS13660Primary locus identifier stored in the genes table.
Old locus tagHMPREF9518_02171Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454585.1Sequence record reported by the local genomic context database.
Genomic interval79 160-80 617 nt1 458 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 441-80 617 ntGCF_000147475::NZ_GL454585.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147475::NZ_GL454585.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454585.1All displayed genes belong to this local TCS context.
Neighborhood span78 441-80 617 nt2 177 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 441 nt80 617 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9518_RS13655GCF_000147475#HMPREF9518_RS13655
RROmpR
78 441-79 160 nt · Forward (+)
HMPREF9518_RS13660GCF_000147475#HMPREF9518_RS13660
HKClassicCurrent focus
79 160-80 617 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147475#HMPREF9518_RS13660The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1575863
Simplified PFAM architecture for HKOC_1575863
PFAM domain coverage: 227 / 485 aa (46.8%)
1 aa485 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-247] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1575863
- Positioned domains: HAMP 196-247 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_000147475#HMPREF9518_RS13660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 515 · GCF_000147475
AssemblyASM14747v1 · Scaffoldhaploid
Genome composition2 836 540 bp · 37,5% GCEnterococcus faecalis TX1342
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key