1 HAMP#1
130-208 aa · 79 aa · 17.7% of protein
Raw token
HAMP:130:0.000000253:208:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9519_RS13860
Histidine kinase, Classic
Enterococcus faecalis TX1346 · GCF_000147455
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147455#HMPREF9519_RS13860Stable P2CS identifier used across views.
GenomeGCF_000147455Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 447 aa (57.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-284 aa · 65 aa · 14.5% of protein
Raw token
HisKA:220:0.0000000000000112:284:65:643 HATPase_c#3
329-442 aa · 114 aa · 25.5% of protein
Raw token
HATPase_c:329:3.88e-32:442:114:109- Raw architecture: HAMP:130:0.000000253:208:79:69#HisKA:220:0.0000000000000112:284:65:64#HATPase_c:329:3.88e-32:442:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147455::NZ_GL454653.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7956-9988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9519_02201RefSeq proteinWP_025187858.1
Context group ID
GCF_000147455::NZ_GL454653.1::G00009Context members
HMPREF9519_RS13855HMPREF9519_RS13860
Partner locus tags
HMPREF9519_RS13855HMPREF9519_RS13860
Partner old locus tags
HMPREF9519_02200HMPREF9519_02201
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025187858.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9519_RS13860Primary locus identifier stored in the genes table.
Old locus tagHMPREF9519_02201Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454653.1Sequence record reported by the local genomic context database.
Genomic interval8 645-9 988 nt1 344 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 956-9 988 ntGCF_000147455::NZ_GL454653.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147455::NZ_GL454653.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454653.1All displayed genes belong to this local TCS context.
Neighborhood span7 956-9 988 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 956 nt9 988 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9519_RS13855GCF_000147455#HMPREF9519_RS13855
RROmpR
7 956-8 648 nt · Reverse (-)
HMPREF9519_RS13860GCF_000147455#HMPREF9519_RS13860
HKClassicCurrent focus
8 645-9 988 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147455#HMPREF9519_RS13860The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1999520
Simplified PFAM architecture for HKOC_1999520
PFAM domain coverage: 178 / 447 aa (39.8%)
1 aa447 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[220-284] | HATPase_c[330-442]
- Domain count: 2
- Matched identifier: HKOC_1999520
- Positioned domains: HisKA 220-284 ; HATPase_c 330-442
Cluster members and taxonomy
Representative gene: GCF_000147455#HMPREF9519_RS13860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 516 · GCF_000147455
AssemblyASM14745v1 · Scaffoldhaploid
Genome composition2 782 905 bp · 37,5% GCEnterococcus faecalis TX1346
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key