1 HisKA#1
162-229 aa · 68 aa · 17.3% of protein
Raw token
HisKA:162:0.000000000000066:229:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9519_RS07725
Histidine kinase, Classic
Enterococcus faecalis TX1346 · GCF_000147455
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147455#HMPREF9519_RS07725Stable P2CS identifier used across views.
GenomeGCF_000147455Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 393 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-386 aa · 112 aa · 28.5% of protein
Raw token
HATPase_c:275:1.14e-29:386:113:109- Raw architecture: HisKA:162:0.000000000000066:229:68:64#HATPase_c:275:1.14e-29:386:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147455::NZ_GL454599.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151286-153146Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9519_00912RefSeq proteinWP_002395290.1
Context group ID
GCF_000147455::NZ_GL454599.1::G00004Context members
HMPREF9519_RS07725HMPREF9519_RS07730
Partner locus tags
HMPREF9519_RS07725HMPREF9519_RS07730
Partner old locus tags
HMPREF9519_00912HMPREF9519_00913
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002395290.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9519_RS07725Primary locus identifier stored in the genes table.
Old locus tagHMPREF9519_00912Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454599.1Sequence record reported by the local genomic context database.
Genomic interval151 286-152 467 nt1 182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 286-153 146 ntGCF_000147455::NZ_GL454599.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147455::NZ_GL454599.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454599.1All displayed genes belong to this local TCS context.
Neighborhood span151 286-153 146 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 286 nt153 146 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9519_RS07725GCF_000147455#HMPREF9519_RS07725
HKClassicCurrent focus
151 286-152 467 nt · Reverse (-)
HMPREF9519_RS07730GCF_000147455#HMPREF9519_RS07730
RROmpR
152 457-153 146 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147455#HMPREF9519_RS07725The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503297
Simplified PFAM architecture for HKOC_2503297
PFAM domain coverage: 177 / 393 aa (45.0%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[163-228] | HATPase_c[275-385]
- Domain count: 2
- Matched identifier: HKOC_2503297
- Positioned domains: HisKA 163-228 ; HATPase_c 275-385
Cluster members and taxonomy
Representative gene: GCF_000147455#HMPREF9519_RS07725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 516 · GCF_000147455
AssemblyASM14745v1 · Scaffoldhaploid
Genome composition2 782 905 bp · 37,5% GCEnterococcus faecalis TX1346
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key