1 Response_reg#1
6-114 aa · 109 aa · 45.4% of protein
Raw token
Response_reg:6:3.48e-22:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9511_RS08790
Response regulator OmpR family
Enterococcus faecalis TX0630 · GCF_000147255
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147255#HMPREF9511_RS08790Stable P2CS identifier used across views.
GenomeGCF_000147255Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 240 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-231 aa · 74 aa · 30.8% of protein
Raw token
Trans_reg_C:158:2.2e-29:231:75:77- Raw architecture: Response_reg:6:3.48e-22:114:109:111#Trans_reg_C:158:2.2e-29:231:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147255::NZ_GL454789.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14465-15187Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9511_00975RefSeq proteinWP_002363545.1
Context group ID
GCF_000147255::NZ_GL454789.1::G00004Context members
HMPREF9511_RS08790
Partner locus tags
HMPREF9511_RS08790
Partner old locus tags
HMPREF9511_00975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002363545.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TN65Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TN65_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9511_RS08790Primary locus identifier stored in the genes table.
Old locus tagHMPREF9511_00975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454789.1Sequence record reported by the local genomic context database.
Genomic interval14 465-15 187 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 465-15 187 ntGCF_000147255::NZ_GL454789.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147255::NZ_GL454789.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454789.1All displayed genes belong to this local TCS context.
Neighborhood span14 465-15 187 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 465 nt15 187 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9511_RS08790GCF_000147255#HMPREF9511_RS08790
RROmpRCurrent focus
14 465-15 187 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003996775#EPC61_RS03190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0623731
Simplified PFAM architecture for RROC_0623731
PFAM domain coverage: 183 / 267 aa (68.5%)
1 aa267 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[158-231]
- Domain count: 2
- Matched identifier: RROC_0623731
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 158-231 ; Trans_reg_C 158-231
Cluster members and taxonomy
Representative gene: GCF_003996775#EPC61_RS03190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 508 · GCF_000147255
AssemblyASM14725v1 · Scaffoldhaploid
Genome composition3 228 333 bp · 37,0% GCEnterococcus faecalis TX0630
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key