1 HATPase_c#1
565-676 aa · 112 aa · 12.6% of protein
Raw token
HATPase_c:565:1.79e-16:676:112:109P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TAGB_RS11160
Probable incomplete histidine kinase
Escherichia coli str. K-12 substr. MG1655star · GCF_000146735
ClassHKTypeClassicLength890 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_000146735#TAGB_RS11160Stable P2CS identifier used across views.
GenomeGCF_000146735Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 TAGB_RS11160MIST4
Domain signature
Compact overview inferred from the domain field
HATPase_cHpt
Protein length890 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 890 aa (21.6%)Merged over positioned domains only.
Domain description1 HATPase_c,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa890 aa
Domain-by-domain annotation2 items
2 Hpt#2
810-889 aa · 80 aa · 9.0% of protein
Raw token
Hpt:810:0.0000000000000895:889:80:84- Raw architecture: HATPase_c:565:1.79e-16:676:112:109#Hpt:810:0.0000000000000895:889:80:84
- Domain description: 1 HATPase_c,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTAGB_RS11160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 879 462 · GCF_000146735
AssemblyASM14673v1 · Chromosomehaploid
Genome composition4 639 637 bp · 51,0% GCEscherichia coli str. K-12 substr. MG1655star
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key