1 Response_reg#1
13-122 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:13:6.41e-30:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TAGB_RS10475
Response regulator OmpR family
Escherichia coli str. K-12 substr. MG1655star · GCF_000146735
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146735#TAGB_RS10475Stable P2CS identifier used across views.
GenomeGCF_000146735Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:156:2.61e-29:232:77:77- Raw architecture: Response_reg:13:6.41e-30:122:111:111#Trans_reg_C:156:2.61e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146735::NZ_CM000960.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2160877-2162999Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000146735::NZ_CM000960.1::G00016Context members
TAGB_RS10470TAGB_RS10475
Partner locus tags
TAGB_RS10470TAGB_RS10475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000137877.1Primary protein accession used for annex mappings.
UniProt accessionD3GZE3Primary UniProt accession resolved in the annex database.
UniProt IDD3GZE3_ECO44Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTAGB_RS10475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CM000960.1Sequence record reported by the local genomic context database.
Genomic interval2 162 277-2 162 999 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 160 877-2 162 999 ntGCF_000146735::NZ_CM000960.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146735::NZ_CM000960.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000960.1All displayed genes belong to this local TCS context.
Neighborhood span2 160 877-2 162 999 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 160 877 nt2 162 999 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TAGB_RS10470GCF_000146735#TAGB_RS10470
HKClassic
2 160 877-2 162 280 nt · Forward (+)
TAGB_RS10475GCF_000146735#TAGB_RS10475
RROmpRCurrent focus
2 162 277-2 162 999 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0881919
Simplified PFAM architecture for RROC_0881919
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0881919
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000005845#b2079
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 879 462 · GCF_000146735
AssemblyASM14673v1 · Chromosomehaploid
Genome composition4 639 637 bp · 51,0% GCEscherichia coli str. K-12 substr. MG1655star
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key