1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:4.51e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACI_RS14070
Response regulator OmpR family
Bacillus cereus biovar anthracis str. CI · GCF_000143605
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000143605#BACI_RS14070Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 215 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-210 aa · 72 aa · 33.5% of protein
Raw token
Trans_reg_C:139:8.17e-28:210:77:77- Raw architecture: Response_reg:3:4.51e-34:112:111:111#Trans_reg_C:139:8.17e-28:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000143605::NC_014335.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2651351-2653367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACI_c28290RefSeq proteinWP_000865975.1
Context group ID
GCF_000143605::NC_014335.1::G00035Context members
BACI_RS14065BACI_RS14070
Partner locus tags
BACI_RS14065BACI_RS14070
Partner old locus tags
BACI_c28280BACI_c28290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000865975.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACI_RS14070Primary locus identifier stored in the genes table.
Old locus tagBACI_c28290Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014335.1Sequence record reported by the local genomic context database.
Genomic interval2 652 720-2 653 367 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 651 351-2 653 367 ntGCF_000143605::NC_014335.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000143605::NC_014335.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014335.1All displayed genes belong to this local TCS context.
Neighborhood span2 651 351-2 653 367 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 651 351 nt2 653 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACI_RS14065GCF_000143605#BACI_RS14065
HKClassic
2 651 351-2 652 727 nt · Reverse (-)
BACI_RS14070GCF_000143605#BACI_RS14070
RROmpRCurrent focus
2 652 720-2 653 367 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000143605#BACI_RS14070The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906703
Simplified PFAM architecture for RROC_1906703
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1906703
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000143605#BACI_RS14070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 637 380 · GCF_000143605
AssemblyASM14360v1 · Complete Genomehaploid
Genome composition5 486 649 bp · 35,5% GCBacillus cereus biovar anthracis str. CI
Signal transduction countsGenes 107 · HK 55 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key