1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:3.4e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACI_RS01675
Response regulator OmpR family
Bacillus cereus biovar anthracis str. CI · GCF_000143605
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000143605#BACI_RS01675Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:3.29e-37:229:77:77- Raw architecture: Response_reg:6:3.4e-36:115:111:111#Trans_reg_C:153:3.29e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000143605::NC_014335.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span276795-277496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACI_c03210RefSeq proteinWP_000929888.1
Context group ID
GCF_000143605::NC_014335.1::G00001Context members
BACI_RS01675
Partner locus tags
BACI_RS01675
Partner old locus tags
BACI_c03210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000929888.1Primary protein accession used for annex mappings.
UniProt accessionQ6HPC4Primary UniProt accession resolved in the annex database.
UniProt IDQ6HPC4_BACHKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACI_RS01675Primary locus identifier stored in the genes table.
Old locus tagBACI_c03210Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014335.1Sequence record reported by the local genomic context database.
Genomic interval276 795-277 496 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span276 795-277 496 ntGCF_000143605::NC_014335.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000143605::NC_014335.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014335.1All displayed genes belong to this local TCS context.
Neighborhood span276 795-277 496 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 795 nt277 496 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACI_RS01675GCF_000143605#BACI_RS01675
RROmpRCurrent focus
276 795-277 496 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS01550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080363
Simplified PFAM architecture for RROC_1080363
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1080363
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS01550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 637 380 · GCF_000143605
AssemblyASM14360v1 · Complete Genomehaploid
Genome composition5 486 649 bp · 35,5% GCBacillus cereus biovar anthracis str. CI
Signal transduction countsGenes 107 · HK 55 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key