1 Response_reg#1
6-114 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:6:1.84e-34:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMB171_RS05695
Response regulator OmpR family
Bacillus thuringiensis BMB171 · GCF_000092165
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092165#BMB171_RS05695Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:154:9.49e-33:231:78:77- Raw architecture: Response_reg:6:1.84e-34:114:110:111#Trans_reg_C:154:9.49e-33:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092165::NC_014171.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1106679-1109135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMB171_C0985RefSeq proteinWP_000283871.1
Context group ID
GCF_000092165::NC_014171.1::G00013Context members
BMB171_RS05690BMB171_RS05695
Partner locus tags
BMB171_RS05690BMB171_RS05695
Partner old locus tags
BMB171_C0984BMB171_C0985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000283871.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6IS79Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6IS79_BACUDDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMB171_RS05695Primary locus identifier stored in the genes table.
Old locus tagBMB171_C0985Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014171.1Sequence record reported by the local genomic context database.
Genomic interval1 108 431-1 109 135 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 106 679-1 109 135 ntGCF_000092165::NC_014171.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092165::NC_014171.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014171.1All displayed genes belong to this local TCS context.
Neighborhood span1 106 679-1 109 135 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 106 679 nt1 109 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMB171_RS05690GCF_000092165#BMB171_RS05690
HKClassic
1 106 679-1 108 421 nt · Reverse (-)
BMB171_RS05695GCF_000092165#BMB171_RS05695
RROmpRCurrent focus
1 108 431-1 109 135 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS05600Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047067
Simplified PFAM architecture for RROC_1047067
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_1047067
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS05600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 714 359 · GCF_000092165
AssemblyASM9216v1 · Complete Genomehaploid
Genome composition5 643 051 bp · 35,0% GCBacillus thuringiensis BMB171
Signal transduction countsGenes 101 · HK 54 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key