1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.42e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD196_RS12880
Response regulator OmpR family
Clostridioides difficile CD196 · GCF_000085225
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000085225#CD196_RS12880Stable P2CS identifier used across views.
GenomeGCF_000085225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:5.52e-32:227:77:77- Raw architecture: Response_reg:4:3.42e-28:113:111:111#Trans_reg_C:151:5.52e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000085225::NC_013315.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2757229-2759240Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCD196_2376RefSeq proteinWP_009890737.1
Context group ID
GCF_000085225::NC_013315.1::G00040Context members
CD196_RS12875CD196_RS12880
Partner locus tags
CD196_RS12875CD196_RS12880
Partner old locus tags
CD196_2375CD196_2376
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009890737.1Primary protein accession used for annex mappings.
UniProt accessionA0A069B0L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A069B0L7_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD196_RS12880Primary locus identifier stored in the genes table.
Old locus tagCD196_2376Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013315.1Sequence record reported by the local genomic context database.
Genomic interval2 758 533-2 759 240 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 757 229-2 759 240 ntGCF_000085225::NC_013315.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000085225::NC_013315.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013315.1All displayed genes belong to this local TCS context.
Neighborhood span2 757 229-2 759 240 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 757 229 nt2 759 240 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CD196_RS12875GCF_000085225#CD196_RS12875
HKClassic
2 757 229-2 758 539 nt · Reverse (-)
CD196_RS12880GCF_000085225#CD196_RS12880
RROmpRCurrent focus
2 758 533-2 759 240 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016365
Simplified PFAM architecture for RROC_1016365
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1016365
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 645 462 · GCF_000085225
AssemblyASM8522v1 · Complete Genomehaploid
Genome composition4 110 554 bp · 28,5% GCClostridioides difficile CD196
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key