1 Response_reg#1
4-114 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:4:1.79e-23:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD196_RS02285
Response regulator LytTR family
Clostridioides difficile CD196 · GCF_000085225
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000085225#CD196_RS02285Stable P2CS identifier used across views.
GenomeGCF_000085225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 245 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-220 aa · 79 aa · 32.2% of protein
Raw token
LytTR:142:0.0000000000000523:220:80:98- Raw architecture: Response_reg:4:1.79e-23:114:113:111#LytTR:142:0.0000000000000523:220:80:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000085225::NC_013315.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span415491-416228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCD196_0358RefSeq proteinWP_009888197.1
Context group ID
GCF_000085225::NC_013315.1::G00003Context members
CD196_RS02285
Partner locus tags
CD196_RS02285
Partner old locus tags
CD196_0358
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888197.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N3N8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N3N8_CLODCDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD196_RS02285Primary locus identifier stored in the genes table.
Old locus tagCD196_0358Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013315.1Sequence record reported by the local genomic context database.
Genomic interval415 491-416 228 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span415 491-416 228 ntGCF_000085225::NC_013315.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000085225::NC_013315.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013315.1All displayed genes belong to this local TCS context.
Neighborhood span415 491-416 228 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
415 491 nt416 228 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CD196_RS02285GCF_000085225#CD196_RS02285
RRLytTRCurrent focus
415 491-416 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789273
Simplified PFAM architecture for RROC_0789273
PFAM domain coverage: 202 / 245 aa (82.4%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[143-234]
- Domain count: 2
- Matched identifier: RROC_0789273
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 143-234 ; LytTR 143-234
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 645 462 · GCF_000085225
AssemblyASM8522v1 · Complete Genomehaploid
Genome composition4 110 554 bp · 28,5% GCClostridioides difficile CD196
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key