1 HAMP#1
161-229 aa · 69 aa · 15.3% of protein
Raw token
HAMP:161:0.000000000745:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECDH1_RS08935
Histidine kinase, Classic
Escherichia coli DH1 · GCF_000023365
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000023365#ECDH1_RS08935Stable P2CS identifier used across views.
GenomeGCF_000023365Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 452 aa (53.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
235-299 aa · 65 aa · 14.4% of protein
Raw token
HisKA:235:0.0000000000751:299:65:643 HATPase_c#3
344-452 aa · 109 aa · 24.1% of protein
Raw token
HATPase_c:344:3.89e-17:452:113:109- Raw architecture: HAMP:161:0.000000000745:229:69:69#HisKA:235:0.0000000000751:299:65:64#HATPase_c:344:3.89e-17:452:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000023365::NC_017625.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1839232-1841261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEcDH1_1683RefSeq proteinWP_000826792.1
Context group ID
GCF_000023365::NC_017625.1::G00017Context members
ECDH1_RS08930ECDH1_RS08935
Partner locus tags
ECDH1_RS08930ECDH1_RS08935
Partner old locus tags
EcDH1_1682EcDH1_1683
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000826792.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECDH1_RS08935Primary locus identifier stored in the genes table.
Old locus tagEcDH1_1683Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017625.1Sequence record reported by the local genomic context database.
Genomic interval1 839 903-1 841 261 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 839 232-1 841 261 ntGCF_000023365::NC_017625.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000023365::NC_017625.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017625.1All displayed genes belong to this local TCS context.
Neighborhood span1 839 232-1 841 261 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 839 232 nt1 841 261 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECDH1_RS08930GCF_000023365#ECDH1_RS08930
RROmpR
1 839 232-1 839 903 nt · Forward (+)
ECDH1_RS08935GCF_000023365#ECDH1_RS08935
HKClassicCurrent focus
1 839 903-1 841 261 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1936926
Simplified PFAM architecture for HKOC_1936926
PFAM domain coverage: 172 / 452 aa (38.1%)
1 aa452 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-300] | HATPase_c[345-451]
- Domain count: 2
- Matched identifier: HKOC_1936926
- Positioned domains: HisKA 236-300 ; HATPase_c 345-451
Cluster members and taxonomy
Representative gene: GCF_000005845#b1968
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 056 · GCF_000023365
AssemblyASM2336v1 · Complete Genomehaploid
Genome composition4 630 707 bp · 51,0% GCEscherichia coli DH1
Signal transduction countsGenes 61 · HK 30 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key