1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:3.23e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCA_RS02430
Response regulator OmpR family
Bacillus cereus 03BB102 · GCF_000022505
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000022505#BCA_RS02430Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:2.82e-37:229:77:77- Raw architecture: Response_reg:6:3.23e-36:115:111:111#Trans_reg_C:153:2.82e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000022505::NC_012472.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span275647-277837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCA_0327RefSeq proteinWP_001262951.1
Context group ID
GCF_000022505::NC_012472.1::G00001Context members
BCA_RS02430BCA_RS02435
Partner locus tags
BCA_RS02430BCA_RS02435
Partner old locus tags
BCA_0327BCA_0328
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001262951.1Primary protein accession used for annex mappings.
UniProt accessionA0A158RQL5Primary UniProt accession resolved in the annex database.
UniProt IDA0A158RQL5_BACC3Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCA_RS02430Primary locus identifier stored in the genes table.
Old locus tagBCA_0327Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012472.1Sequence record reported by the local genomic context database.
Genomic interval275 647-276 348 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span275 647-277 837 ntGCF_000022505::NC_012472.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000022505::NC_012472.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012472.1All displayed genes belong to this local TCS context.
Neighborhood span275 647-277 837 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 647 nt277 837 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCA_RS02430GCF_000022505#BCA_RS02430
RROmpRCurrent focus
275 647-276 348 nt · Forward (+)
BCA_RS02435GCF_000022505#BCA_RS02435
HKClassic
276 332-277 837 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000022505#BCA_RS02430The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080576
Simplified PFAM architecture for RROC_1080576
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1080576
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000022505#BCA_RS02430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 572 264 · GCF_000022505
AssemblyASM2250v1 · Complete Genomehaploid
Genome composition5 449 308 bp · 35,5% GCBacillus cereus 03BB102
Signal transduction countsGenes 107 · HK 57 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key